PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G868061_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family BES1
Protein Properties Length: 171aa    MW: 18755.7 Da    PI: 9.9655
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G868061_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822128.21e-39421532114
             DUF822   2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspess 93 
                        +s r+pt +ErEnn++RERrRR++aa+iyaGLRa ++y+lpk+aD+n+Vl+ALc+eAG+ v+d+G++ r++    + a+   +s++ ++ ss
  GRMZM5G868061_P01  42 TSLRHPTPRERENNRQRERRRRQVAARIYAGLRARAGYALPKHADQNDVLRALCAEAGYHVDDEGNVTRHQGV-GDGAAGPSCSSDHQKPSS 132
                        789****************************************************************993332.246888888888999999 PP

             DUF822  94 lqsslkssalaspvesysasp 114
                        ++ ++++ +l+   e++++ +
  GRMZM5G868061_P01 133 ISGTVEAATLQQEQEQQHQGQ 153
                        998888888887777777654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056871.3E-2944134IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MERQAGAGRE EGVAAAPRKG CIRSTQGPWT VRRRGRGGGL TTSLRHPTPR ERENNRQRER  60
RRRQVAARIY AGLRARAGYA LPKHADQNDV LRALCAEAGY HVDDEGNVTR HQGVGDGAAG  120
PSCSSDHQKP SSISGTVEAA TLQQEQEQQH QGQREEGVNM SLELTLSFAY M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A3e-1165110392437Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B3e-1165110392437Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C3e-1165110392437Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D3e-1165110392437Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G868061
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G868061_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9477561e-180EU947756.1 Zea mays clone 356679 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001357917.11e-122uncharacterized LOC103649675
TrEMBLA0A1D6MJX21e-121A0A1D6MJX2_MAIZE; BES1/BZR family protein BES1/BZR6
STRINGGRMZM5G868061_P011e-122(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132013032
Representative plantOGRP100841011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19350.36e-15BES1 family protein