PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G868875_P01
Common NameLOC103625831
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GeBP
Protein Properties Length: 257aa    MW: 28094.5 Da    PI: 9.9153
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G868875_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57330.69.1e-1068159497
             DUF573   4 qrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 
                         r w  +Dei++L  + + ++k+g  p +d  a     + s+  + s  q++ ++  L++++ + v + k+g  p  +k++d  i+ lsk i
  GRMZM5G868875_P01  68 VRSWPASDEIAILETVASHRQKHGRLPLADDLAAAVRGRLSVGDRLSAAQITRRLCALRNRYDNTVIRLKRGTIP--AKDSDVTIYRLSKLI 157
                        689*********************999987666666677777789***********************8888775..689999********* PP

             DUF573  96 Wg 97 
                        W+
  GRMZM5G868875_P01 158 WE 159
                        *7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.1E-1468159IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MTSEEHPSSA SSDGSTTIGS DEHLDPSPSP STSFDSPPES DDSAASSLLS DGSSESEPII  60
FKKPRPPVRS WPASDEIAIL ETVASHRQKH GRLPLADDLA AAVRGRLSVG DRLSAAQITR  120
RLCALRNRYD NTVIRLKRGT IPAKDSDVTI YRLSKLIWEG TRRGRIEKKT RVPDARNDPR  180
GFDDLAELYP CLSAEVEAIG ARCGYGALKR AFGRIGDDTA ARLEAKLKRQ RMAETRASGK  240
LDRLRSRVAN ALQGFNK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1225230KLKRQR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.281520.0cell culture| endosperm| meristem| ovary| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G868875
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G868875_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0390650.0BT039065.1 Zea mays full-length cDNA clone ZM_BFb0368A17 mRNA, complete cds.
GenBankEU9707260.0EU970726.1 Zea mays clone 349552 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001306633.10.0uncharacterized protein LOC103625831
TrEMBLA0A3L6ELI90.0A0A3L6ELI9_MAIZE; Uncharacterized protein
TrEMBLB4FPM70.0B4FPM7_MAIZE; Tyrosine specific protein phosphatase-like
TrEMBLK0DF170.0K0DF17_MAIZE; GBP19 GeBP type transcription factor (Fragment)
STRINGGRMZM5G868875_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1402355
Representative plantOGRP1281822
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]