PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G868875_P02
Common NameLOC103625831
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GeBP
Protein Properties Length: 257aa    MW: 28094.5 Da    PI: 9.9153
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G868875_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57330.69.1e-1068159497
             DUF573   4 qrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 
                         r w  +Dei++L  + + ++k+g  p +d  a     + s+  + s  q++ ++  L++++ + v + k+g  p  +k++d  i+ lsk i
  GRMZM5G868875_P02  68 VRSWPASDEIAILETVASHRQKHGRLPLADDLAAAVRGRLSVGDRLSAAQITRRLCALRNRYDNTVIRLKRGTIP--AKDSDVTIYRLSKLI 157
                        689*********************999987666666677777789***********************8888775..689999********* PP

             DUF573  96 Wg 97 
                        W+
  GRMZM5G868875_P02 158 WE 159
                        *7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.1E-1468159IPR007592Protein of unknown function DUF573
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MTSEEHPSSA SSDGSTTIGS DEHLDPSPSP STSFDSPPES DDSAASSLLS DGSSESEPII  60
FKKPRPPVRS WPASDEIAIL ETVASHRQKH GRLPLADDLA AAVRGRLSVG DRLSAAQITR  120
RLCALRNRYD NTVIRLKRGT IPAKDSDVTI YRLSKLIWEG TRRGRIEKKT RVPDARNDPR  180
GFDDLAELYP CLSAEVEAIG ARCGYGALKR AFGRIGDDTA ARLEAKLKRQ RMAETRASGK  240
LDRLRSRVAN ALQGFNK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1225230KLKRQR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.281520.0cell culture| endosperm| meristem| ovary| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G868875
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G868875_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0390650.0BT039065.1 Zea mays full-length cDNA clone ZM_BFb0368A17 mRNA, complete cds.
GenBankEU9707260.0EU970726.1 Zea mays clone 349552 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001306633.10.0uncharacterized protein LOC103625831
TrEMBLA0A3L6ELI90.0A0A3L6ELI9_MAIZE; Uncharacterized protein
TrEMBLB4FPM70.0B4FPM7_MAIZE; Tyrosine specific protein phosphatase-like
TrEMBLK0DF170.0K0DF17_MAIZE; GBP19 GeBP type transcription factor (Fragment)
STRINGGRMZM5G868875_P010.0(Zea mays)
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]