PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G873586_P02
Common NameLOC100501207, ZEAMMB73_122247
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family LBD
Protein Properties Length: 332aa    MW: 36415.1 Da    PI: 4.2283
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G873586_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260132.61.6e-411812801100
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                        +Ca+C++lr++C+++Cv+apyfpae+p+kfa+vhk+FG snv kll++lp ++r da+ss+vyeA++r+rdPvyG+vg i+ lqqq++ql+ 
  GRMZM5G873586_P02 181 PCASCRMLRQQCTQECVFAPYFPAEEPHKFAIVHKVFGGSNVFKLLQELPAHQRGDAVSSMVYEANVRTRDPVYGCVGAISVLQQQISQLQM 272
                        7******************************************************************************************* PP

             DUF260  93 elallkee 100
                        + +++++e
  GRMZM5G873586_P02 273 QFSMARAE 280
                        *9999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5001111.1431152IPR000719Protein kinase domain
Gene3DG3DSA:3.30.200.201.1E-43256No hitNo description
SuperFamilySSF561121.48E-1557149IPR011009Protein kinase-like domain
Gene3DG3DSA:1.10.510.101.2E-1457168No hitNo description
PfamPF000693.2E-1159146IPR000719Protein kinase domain
PROSITE profilePS5089125.51180281IPR004883Lateral organ boundaries, LOB
PfamPF031952.5E-41181278IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006468Biological Processprotein phosphorylation
GO:0004674Molecular Functionprotein serine/threonine kinase activity
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MDIIYQDSSC LALEQALHDE GVGPIDLPFM LLRAITKDFS DTQLIGRGGF GEVYKVCMGY  60
LAPEFLSSNA ITFKADIYSL GVIITEILTG HKECTSVDKV LESWTDMFQT LGSHPLLEQV  120
EVCAEIAINC MNDDPSNRPT IQDIISSIDE TDARSVTSSS PGGQVITMAG SESSSSRSRS  180
PCASCRMLRQ QCTQECVFAP YFPAEEPHKF AIVHKVFGGS NVFKLLQELP AHQRGDAVSS  240
MVYEANVRTR DPVYGCVGAI SVLQQQISQL QMQFSMARAE ILTLQQQMDV NDSLPSQNSF  300
DRYGNGDLKP DSPPEILSSE DEVEEVSSPM SP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-4418028210112LOB family transfactor Ramosa2.1
5ly0_B2e-4418028210112LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G873586
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G873586_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9632330.0EU963233.1 Zea mays clone 259571 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023156926.10.0uncharacterized protein LOC100501207 isoform X2
TrEMBLK7TE930.0K7TE93_MAIZE; Disease resistance protein RPM1
STRINGGRMZM5G873586_P040.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.13e-45LBD family protein