PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G873586_P03
Common NameLOC100501207, ZEAMMB73_122247
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family LBD
Protein Properties Length: 319aa    MW: 35194.9 Da    PI: 4.8574
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G873586_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260132.71.5e-411682671100
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                        +Ca+C++lr++C+++Cv+apyfpae+p+kfa+vhk+FG snv kll++lp ++r da+ss+vyeA++r+rdPvyG+vg i+ lqqq++ql+ 
  GRMZM5G873586_P03 168 PCASCRMLRQQCTQECVFAPYFPAEEPHKFAIVHKVFGGSNVFKLLQELPAHQRGDAVSSMVYEANVRTRDPVYGCVGAISVLQQQISQLQM 259
                        7******************************************************************************************* PP

             DUF260  93 elallkee 100
                        + +++++e
  GRMZM5G873586_P03 260 QFSMARAE 267
                        *9999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5001111.0721139IPR000719Protein kinase domain
PfamPF000697.7E-1243133IPR000719Protein kinase domain
SuperFamilySSF561121.32E-1544136IPR011009Protein kinase-like domain
Gene3DG3DSA:1.10.510.101.6E-1445155No hitNo description
PROSITE profilePS5089125.51167268IPR004883Lateral organ boundaries, LOB
PfamPF031952.3E-41168265IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006468Biological Processprotein phosphorylation
GO:0004674Molecular Functionprotein serine/threonine kinase activity
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MSRVLIRDAT CEGTLRRKIC LGRPAPKVVL LRIPKQREPC RLSDRGYLAP EFLSSNAITF  60
KADIYSLGVI ITEILTGHKE CTSVDKVLES WTDMFQTLGS HPLLEQVEVC AEIAINCMND  120
DPSNRPTIQD IISSIDETDA RSVTSSSPGG QVITMAGSES SSSRSRSPCA SCRMLRQQCT  180
QECVFAPYFP AEEPHKFAIV HKVFGGSNVF KLLQELPAHQ RGDAVSSMVY EANVRTRDPV  240
YGCVGAISVL QQQISQLQMQ FSMARAEILT LQQQMDVNDS LPSQNSFDRY GNGDLKPDSP  300
PEILSSEDEV EEVSSPMSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-4416726910112LOB family transfactor Ramosa2.1
5ly0_B3e-4416726910112LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.835710.0ear| meristem| root
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G873586
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G873586_P03
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0851720.0BT085172.1 Zea mays full-length cDNA clone ZM_BFb0315E02 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023156926.10.0uncharacterized protein LOC100501207 isoform X2
TrEMBLC4J2X50.0C4J2X5_MAIZE; Uncharacterized protein
STRINGGRMZM5G873586_P040.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.14e-45LBD family protein