PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G878490_P01
Common NameMADS62, Zm.145754
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family M-type_MADS
Protein Properties Length: 192aa    MW: 20954 Da    PI: 11.2051
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G878490_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.21.9e-171559246
                       ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
             SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
                       rie+  + qvtfskR+ g+ KKA ELS LC+  vav+ifs+  k+
  GRMZM5G878490_P01 15 RIEEGGRLQVTFSKRKSGLQKKAAELSLLCGSPVAVVIFSPGRKV 59
                       8999999*********************************98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-22665IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.184666IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-21775IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-16828IPR002100Transcription factor, MADS-box
PfamPF003193.1E-181560IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-162843IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-164364IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MGRPSRGRQR IEIRRIEEGG RLQVTFSKRK SGLQKKAAEL SLLCGSPVAV VIFSPGRKVF  60
ALGTPSVDHV LRRHAPPVLG EGEEDGLLPA LQDGNVVMSS SAIADRAEVE NIVRRTEETK  120
ARSVAEKARM DAVGKAVRQA AAKAGRRFWW EADSGELGDA ELPGFAKALR RLRVNLQRHL  180
DSLSASANKQ LQ
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G878490
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G878490_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7284030.0KJ728403.1 Zea mays clone pUT6708 MADS transcription factor (MADS62) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001296821.11e-135uncharacterized protein LOC100194048
TrEMBLA0A060D9371e-134A0A060D937_MAIZE; MADS transcription factor (Fragment)
STRINGGRMZM5G878490_P011e-135(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28333088
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-25AGAMOUS-like 62