PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G879778_P01
Common NameZEAMMB73_156293
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GATA
Protein Properties Length: 228aa    MW: 24438.8 Da    PI: 12.2997
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G879778_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA47.81.9e-15189223135
               GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                        CsnCg+t+TplWR g+dg+ tLCn CGl+  ++++
  GRMZM5G879778_P01 189 CSNCGSTETPLWRMGSDGSATLCNKCGLRLSRNRQ 223
                        *****************************988775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011413.138183228IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.75E-12183220No hitNo description
SMARTSM004012.3E-6183227IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.107.3E-15187223IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.70E-11188217No hitNo description
PfamPF003202.4E-12189222IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MKPTPSPIAI DNDKELLQDL AVAASLSSGN SPSSSAVETT TTLPPTPWRF VMPRRKRRKR  60
RDRRPVVMRG SIRPGIPTLH AAAMSSSSSG NWPCSLAAET TPPPQLWRLV VPTRKRGRRS  120
VVMRDSIKRS CSLGTTPGIP TPHVAGNSNP SSSGGGSGGG STGARRQLES LQVRPRPPPT  180
NRQRVQRVCS NCGSTETPLW RMGSDGSATL CNKCGLRLSR NRQAAQAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15460RKRRKRR
25461RKRRKRRD
35563KRRKRRDRR
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G879778
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G879778_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7284110.0KJ728411.1 Zea mays clone pUT6716 C2C2-GATA transcription factor (GATA36) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008679967.15e-86transcription factor elt-1
TrEMBLK7USP11e-84K7USP1_MAIZE; C2C2-GATA transcription factor (Fragment)
STRINGGRMZM5G879778_P011e-159(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36240.13e-09GATA transcription factor 7