PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G882527_P04
Common Namesi683023f08
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 252aa    MW: 27762.3 Da    PI: 8.8277
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G882527_P04genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH309.6e-10149196455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +h+ +Er RR+ri +++  L+ l+P +    +k   Ka iL + ++Y++sLq
  GRMZM5G882527_P04 149 SHSLAERVRRERISERMRMLQALVPGC----DKVTGKALILDEIINYVQSLQ 196
                        8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.75E-17143211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.50E-10143200No hitNo description
Gene3DG3DSA:4.10.280.107.8E-17145209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.542145195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.2E-7149196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-10151201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MAGFSRPNNS LLLKMPATLA SSHTPNLSSL LFYDQNHGQA VNANAAAMMV EDDASLQSSS  60
AVVDTSPQPQ GSAAAASPME RKRKPAEDSA TLSSAQSKED CKQQQESKSR RGKRPHNKEA  120
NTEEKSATED EATRGYIHVR ARRGQATDSH SLAERVRRER ISERMRMLQA LVPGCDKVTG  180
KALILDEIIN YVQSLQNQVE FLSMRIASMS PVLYGFGLDS DGLHDHAQVW NSKIIFLSAK  240
NTVNKLMFKC EL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.7480.0embryo| meristem| pericarp
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G882527
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G882527_P04
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0353770.0BT035377.1 Zea mays full-length cDNA clone ZM_BFb0058D24 mRNA, complete cds.
GenBankKJ7268620.0KJ726862.1 Zea mays clone pUT3403 bHLH transcription factor (bHLH173) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008648030.11e-168uncharacterized protein LOC100193179 isoform X1
TrEMBLB4FE391e-166B4FE39_MAIZE; BHLH transcription factor
STRINGGRMZM5G882527_P031e-167(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.26e-40bHLH family protein