PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM5G887975_P01
Common NameZEAMMB73_508450
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GATA
Protein Properties Length: 155aa    MW: 16929.1 Da    PI: 10.1107
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM5G887975_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA23.48.1e-0863791935
               GATA 19 nktLCnaCGlyyrkkgl 35
                       + +LCnaCG++y+k+++
  GRMZM5G887975_P01 63 PASLCNACGIRYKKEER 79
                       568***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.50.102.1E-56482IPR013088Zinc finger, NHR/GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MGLPAEQWYC YHEEGGASPY GAASNPDRLH AVARHAVHAP GRISRRRRRR RLDGGAPPRL  60
SAPASLCNAC GIRYKKEERR RRTSAAGTLD RRAPPQQQWG CYGPGAGKSA ASYGMYDGDV  120
GVVAVDGPCL SWMLEVVPSS PAFAARERRT LSPYY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14150RISRRRRRRR
24450RRRRRRR
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM5G887975
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM5G887975_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020398400.29e-59uncharacterized protein LOC103637009
TrEMBLA0A1D6FKM86e-65A0A1D6FKM8_MAIZE; GATA transcription factor 19
TrEMBLA0A3L6DJH76e-65A0A3L6DJH7_MAIZE; GATA transcription factor 20
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50870.11e-07GATA family protein