PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM6G287292_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family BES1
Protein Properties Length: 256aa    MW: 27005.5 Da    PI: 10.3186
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM6G287292_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822207.73.2e-64131551145
             DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspes 92 
                        g++gr+ptw+ErEnnkrRERrRRaiaaki+aGLRa+G+yklpk++DnneVlkALc+eAGwvve+DGttyr+gskp+e+++ +g+s s sp+s
  GRMZM6G287292_P01  13 GAGGRMPTWRERENNKRRERRRRAIAAKIFAGLRAHGGYKLPKHCDNNEVLKALCNEAGWVVEPDGTTYRQGSKPMERMDPIGCSVSPSPCS 104
                        689***************************************************************************************** PP

             DUF822  93 slqsslkssalaspvesysaspksssfpspssldsislasa......asllpvlsvlsl 145
                        s+q        +sp++sy+asp+sssfps +s+ +++ ++       + +lp+l++ s+
  GRMZM6G287292_P01 105 SYQ--------PSPRASYNASPTSSSFPSGASSPFLPPNEMpngidgNPILPWLKTFSN 155
                        ***........999999999999999999999998887766777887888888888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056876.5E-6315153IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MASGGGGGLG AAGAGGRMPT WRERENNKRR ERRRRAIAAK IFAGLRAHGG YKLPKHCDNN  60
EVLKALCNEA GWVVEPDGTT YRQGSKPMER MDPIGCSVSP SPCSSYQPSP RASYNASPTS  120
SSFPSGASSP FLPPNEMPNG IDGNPILPWL KTFSNGTPSK KHPLLPPLLI HGGSISAPVT  180
PPLSSPSART PRMKTDWDEA AVQPPWHGAS SPTIVNSTPP SPGRPIAPDP AWLAGIQISS  240
TSPNSPTFSL VSTNPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A2e-231788372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B2e-231788372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C2e-231788372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D2e-231788372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.133400.0ear| endosperm| leaf| meristem| ovary| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM6G287292
Functional Description ? help Back to Top
Source Description
UniProtMay function in brassinosteroid signaling. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM6G287292_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0365570.0BT036557.1 Zea mays full-length cDNA clone ZM_BFb0123H10 mRNA, complete cds.
GenBankEU9684910.0EU968491.1 Zea mays clone 321364 brassinazole-resistant 1 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001132634.10.0Protein BRASSINAZOLE-RESISTANT 1
SwissprotQ0JPT41e-107BZR2_ORYSJ; Protein BZR1 homolog 2
TrEMBLA0A2D0Z7N30.0A0A2D0Z7N3_MAIZE; BES1/BZR family protein BES1/BZR11 (Fragment)
TrEMBLB4FHG90.0B4FHG9_MAIZE; Brassinazole-resistant 1 protein
STRINGGRMZM6G287292_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136638112
Representative plantOGRP15951542
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78700.18e-49BES1/BZR1 homolog 4
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]