PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00000138001

Common Name

GSBRNA2T00000138001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Dof

Protein Properties

Length: 339aa MW: 36710.5 Da PI: 7.8914

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00000138001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121	4.1e-38	42	101	4	63
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 +al+cprC+s ntkfCyynnysl+qPryfCk C+ryWt+GG+lrn+P+Ggg rknk+sss GSBRNA2T00000138001 42 HALNCPRCNSLNTKFCYYNNYSLTQPRYFCKDCKRYWTQGGSLRNIPIGGGVRKNKRSSS 101 6799****************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-28	26	92	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.9E-33	43	98	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.546	44	98	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	46	82	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MDIAKWPQKE FIVKPMNETC LKQPNPAAAP VEEKKARPEK YHALNCPRCN SLNTKFCYYN 60 NYSLTQPRYF CKDCKRYWTQ GGSLRNIPIG GGVRKNKRSS SSSSSNSNSA SSSKKTLSVN 120 NKTPPPLQQL NLKTVENDHV AKACSHGFGN AHEAKDLNSA FSQGFEIGHH HHHHHQSIPE 180 FLQVVPSSMK NHTFVSTSSA LELLGISNSS TTSSNSSPAF VTYPNVHDSS VYTAASPGFG 240 MSYPQFQEFM RPPLGFSLDG GDSLHLEEGS SGTDNGRPLL PFESLKLHVS SSSTNSGGGN 300 GNDHEREKEE GEADNSVGFW NGMLSAGDSA ASAGGPWQ*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00210	DAP	Transfer from AT1G64620	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00000138001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022568900.1	0.0	dof zinc finger protein DOF1.8 isoform X1
Swissprot	Q84JQ8	1e-133	DOF18_ARATH; Dof zinc finger protein DOF1.8
TrEMBL	A0A078F5M3	0.0	A0A078F5M3_BRANA; BnaC09g12040D protein
STRING	Bo9g032170.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14932	17	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64620.1	1e-127	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Tian C, et al. An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation. Mol. Syst. Biol., 2014. 10: p. 755 [PMID:25358340]