PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00000162001
Common NameGSBRNA2T00000162001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 232aa    MW: 26425.9 Da    PI: 7.0351
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00000162001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like71.51.3e-222371148
              G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtle.hvkS 48
                         kprlrWt eLHerFv+av++LGG++kAtPkti+++m vk ++++ ++ S
  GSBRNA2T00000162001 23 KPRLRWTAELHERFVDAVTHLGGPDKATPKTIMRVMAVKAISRSsDLES 71
                         79**************************************997524555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-192066IPR009057Homeodomain-like
SuperFamilySSF466891.97E-82265IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-152366IPR006447Myb domain, plants
PfamPF143792.6E-14125165IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MMQSREERRA ESPSGLVLTT DPKPRLRWTA ELHERFVDAV THLGGPDKAT PKTIMRVMAV  60
KAISRSSDLE SSLTKEHSHG HSTNIRDTNR VVNRHRSITH AASMLDLQRN VVFSTPHIIG  120
RNMNEMQMEV KRRIEEEVEV ERQVNQRIEA QGKYMESMLE KACETQEASL TKGYSTLFFN  180
NTSPLPIPWF EDHFPSSSSM DSTLNLSDIR LNFSLQDSLS RLENTYVGLI I*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in phloem and/or cambium. {ECO:0000269|PubMed:15923329}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00000162001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893351e-150AC189335.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB039A19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013681471.11e-141myb family transcription factor PHL12-like isoform X1
SwissprotQ8VYI21e-110PHLC_ARATH; Myb family transcription factor PHL12
TrEMBLA0A078F9F51e-171A0A078F9F5_BRANA; BnaA05g26440D protein
STRINGBo5g133200.11e-139(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137451726
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12730.11e-87G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]