PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00000286001
Common NameGSBRNA2T00000286001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 249aa    MW: 28040.9 Da    PI: 8.1339
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00000286001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3105.82.2e-3324128199
                          EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                          f+k ltpsdv+k++rlv+pk++ae++      gg   +++ l++edesg+sW+++++y+++s++yvltkGW+++vk+++L++gD+v+F++
  GSBRNA2T00000286001  24 FEKSLTPSDVGKLNRLVIPKQHAERYlplnncGGGDDKGVLLSFEDESGKSWKFRYSYWNSSQSYVLTKGWSRYVKDKHLNAGDVVLFQR 113
                          99******************************44456899*************************************************6 PP

                          -SS.SEE..EEEEE-S CS
                   B3  85 dgr.sefelvvkvfrk 99 
                          + r +  +l+++++r+
  GSBRNA2T00000286001 114 H-RfDIHRLFIGWRRR 128
                          5.44888899999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.7E-4116137IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.44E-3220129IPR015300DNA-binding pseudobarrel domain
CDDcd100174.12E-3023117No hitNo description
PfamPF023623.4E-3024128IPR003340B3 DNA binding domain
PROSITE profilePS5086314.28324129IPR003340B3 DNA binding domain
SMARTSM010192.0E-2524129IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MSVNHYSNTL SSHNHHNEHK ESLFEKSLTP SDVGKLNRLV IPKQHAERYL PLNNCGGGDD  60
KGVLLSFEDE SGKSWKFRYS YWNSSQSYVL TKGWSRYVKD KHLNAGDVVL FQRHRFDIHR  120
LFIGWRRRGE ASSSSAVSQD PRANTTAYWN GLTTPYRQVH ASTSSYPNNI HQEYSHYGPV  180
AETPTVAAGS SKTVRLFGVN LECHSDVVEP PPCPDAYNGQ HFYYYSTPHP MNISFAGEAM  240
EQVGDGRG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-47201284113B3 domain-containing transcription factor NGA1
5os9_B2e-47201284113B3 domain-containing transcription factor NGA1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.54280.0seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00000286001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895471e-170AC189547.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH004P05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022575501.10.0B3 domain-containing protein At3g11580-like
SwissprotQ8RYD31e-137Y3158_ARATH; B3 domain-containing protein At3g11580
TrEMBLA0A078F5Z30.0A0A078F5Z3_BRANA; BnaA05g27480D protein
STRINGBra034828.1-P1e-175(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122028100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11580.11e-133B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]