PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00000302001
Common NameGSBRNA2T00000302001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 641aa    MW: 72719.1 Da    PI: 8.5763
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00000302001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.82.1e-07459501140
                          TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                          +++W++eE + l ++  ++++g   +W+ I++++g+gR+ +++
  GSBRNA2T00000302001 459 KQPWSKEEIDMLRKGMIKYPKGtsrRWEVISEYIGTGRSVEEI 501
                          79************************************99876 PP
2Myb_DNA-binding23.51.3e-07584627445
                          S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                          W+   +  lv+a k ++++   +W+++a+ ++ g+t  qck ++ 
  GSBRNA2T00000302001 584 WSSVQERALVQALKTFPKEtsqRWERVAAAVP-GKTVIQCKKKFA 627
                          ********************************.********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1102.5E-2197201IPR001623DnaJ domain
SuperFamilySSF465654.19E-2199179IPR001623DnaJ domain
SMARTSM002712.6E-19100175IPR001623DnaJ domain
PfamPF002261.2E-17101180IPR001623DnaJ domain
PROSITE profilePS5007618.592101183IPR001623DnaJ domain
CDDcd062571.66E-12101172IPR001623DnaJ domain
PRINTSPR006253.8E-9106124IPR001623DnaJ domain
PRINTSPR006253.8E-9124139IPR001623DnaJ domain
PRINTSPR006253.8E-9155175IPR001623DnaJ domain
PROSITE patternPS006360160179IPR018253DnaJ domain, conserved site
PROSITE profilePS500906.284454509IPR017877Myb-like domain
SuperFamilySSF466891.35E-7455502IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-5458501IPR009057Homeodomain-like
SMARTSM007179.3E-7458511IPR001005SANT/Myb domain
PfamPF002493.8E-6459501IPR001005SANT/Myb domain
CDDcd001671.80E-4461501No hitNo description
PROSITE profilePS500906.934576630IPR017877Myb-like domain
SuperFamilySSF466899.72E-9580629IPR009057Homeodomain-like
SMARTSM007172.1E-7580632IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-4581628IPR009057Homeodomain-like
PfamPF002491.2E-5584628IPR001005SANT/Myb domain
CDDcd001672.09E-5584630No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 641 aa     Download sequence    Send to blast
MPSVRSDSSI KLLITYSEEL VDGKPLYASS NSLPVKALNR EPAGHAFHSA ALKLHGCAEE  60
PTDSEGDDKK AGGDDKEKEY VPSFNSYSNK GKKKSGTQQQ DHYALLGLSN LRYLATEDQI  120
RKSYREAALK HHPDKMASLL LAEETEEAKE AKKEEIESRF KAIQEAYEVL MDPLKRRIFD  180
STDEFDDEVP TDCAPQDFFK VFGPAFKRNA RWSVNQRIPD LGDENTKLKE VDRFYNFWYA  240
FKSWREFPDE EEHDLEQADS REERRWMEKE NARATAKARK EEHARIRTLV DNAYRKDPRI  300
VKRKEEEKAE KQQKKDAKLM AKKKQEEEAA IAAAEEKKRK EEEEKRVVES AQQQKKAKEK  360
EKKLIRKERN RLRALSAPVV AQRLLDISEE DIESLCMTLN IEELQSLCDK MGNKEGVELA  420
KVIKDGSRDQ EANSKEKESE KPNGGGAERV SVLESTQKKQ PWSKEEIDML RKGMIKYPKG  480
TSRRWEVISE YIGTGRSVEE ILKATKTVLL QKPDSAKAFD SFLEKRKPTA TIASPLSTRE  540
ELGESLPAGA TTKVKPPVKE TVVVGQSSES NGEASGSSVD TDGWSSVQER ALVQALKTFP  600
KETSQRWERV AAAVPGKTVI QCKKKFAELK EIIRSKKTAV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A7e-1619730020123Zuotin
5dje_B7e-1619730020123Zuotin
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1321339KKKQEEEAAIAAAEEKKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.101960.0seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00000302001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895470.0AC189547.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH004P05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009146726.10.0PREDICTED: dnaJ homolog subfamily C member 2
TrEMBLA0A078F2700.0A0A078F270_BRANA; BnaA05g27610D protein
STRINGBra034841.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23612755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.10.0DnaJ domain ;Myb-like DNA-binding domain
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]