PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00000377001

Common Name

GSBRNA2T00000377001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

MYB_related

Protein Properties

Length: 154aa MW: 17834.8 Da PI: 6.0305

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00000377001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	39.7	1.1e-12	78	122	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+ E+ ++++ ++G g+Wk+++r+ k+R++ q+ s+ qky GSBRNA2T00000377001 78 PWTAKEHGEFLKGLDEFGRGDWKSVSRKYVKTRSARQVASHAQKY 122 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	9.4E-9	69	126	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.009	71	127	IPR017930	Myb domain
SuperFamily	SSF46689	5.62E-14	73	126	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.9E-14	74	126	IPR006447	Myb domain, plants
SMART	SM00717	2.9E-7	75	125	IPR001005	SANT/Myb domain
Pfam	PF00249	1.7E-9	78	122	IPR001005	SANT/Myb domain
CDD	cd00167	6.90E-7	78	123	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 154 aa Download sequence Send to blast
MFEDALVLTE IDPNRFETIA SYLEMPLEVV KHHYDALVHD VELIESGRYG TTDYQDHADG 60 ILSPETKHME KDKKRGRPWT AKEHGEFLKG LDEFGRGDWK SVSRKYVKTR SARQVASHAQ 120 KYFQRQDMEN HAKKRSSIHD MTLVDDNDVD VNE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00000377001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013640201.2	1e-111	transcription factor SRM1-like
TrEMBL	A0A078F670	1e-110	A0A078F670_BRANA; BnaA05g28230D protein
STRING	Bra029856.1-P	2e-98	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17289	7	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09450.1	2e-42	MYB_related family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]