PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00000580001
Common NameGSBRNA2T00000580001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 181aa    MW: 20550.8 Da    PI: 10.1021
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00000580001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM127.21.3e-3961352127
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                          p+GfrF Pt+ el+++yL+ +++g + ++++ i+ +d+++veP +Lp+    +++++ ++w fF++r++++a+g r++r+t  gyWkatg
  GSBRNA2T00000580001   6 PVGFRFYPTEVELISFYLRFQLNGGNATIHSLIPILDVFSVEPTQLPNlageRCRGDAEQWLFFVPRQEREARGGRPSRTTGLGYWKATG 95 
                          89***************************999**************9656766667888******************************* PP

                  NAM  88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                          +  +v+s +++++g+kkt+vfy g+ap+g+kt+W m+ey+
  GSBRNA2T00000580001  96 SPGPVFSPENRVIGVKKTMVFYIGKAPTGRKTKWKMNEYK 135
                          ***************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.66E-413141IPR003441NAC domain
PROSITE profilePS5100541.5445161IPR003441NAC domain
PfamPF023651.1E-196135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MEHEIPVGFR FYPTEVELIS FYLRFQLNGG NATIHSLIPI LDVFSVEPTQ LPNLAGERCR  60
GDAEQWLFFV PRQEREARGG RPSRTTGLGY WKATGSPGPV FSPENRVIGV KKTMVFYIGK  120
APTGRKTKWK MNEYKGIDET ASVSTIPKVP SYIFKVHIFF KVTFSQILFV LNHLKFSFDL  180
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-31213512139Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00000580001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013626236.11e-107PREDICTED: putative NAC domain-containing protein 61
RefseqXP_013642722.11e-107putative NAC domain-containing protein 61
SwissprotQ9M2905e-95NAC61_ARATH; Putative NAC domain-containing protein 61
TrEMBLA0A078FA681e-130A0A078FA68_BRANA; BnaC03g54890D protein
STRINGBo3g122200.11e-106(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14452893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44350.22e-97NAC domain containing protein 61
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]