PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00000777001
Common NameGSBRNA2T00000777001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 283aa    MW: 31781 Da    PI: 7.0879
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00000777001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.97.1e-20109159256
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                           y+G+r+++ +g+WvAeIr p++   r+r +lg+f taeeAa a+++a+ k++ge
  GSBRNA2T00000777001 109 LYRGIRQRH-WGKWVAEIRLPKN---RTRLWLGTFETAEEAALAYDQAAHKIRGE 159
                          59******9.**********965...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.15E-34108167No hitNo description
PROSITE profilePS5103222.853109166IPR001471AP2/ERF domain
SuperFamilySSF541713.92E-22109166IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.3E-32109167IPR001471AP2/ERF domain
SMARTSM003808.0E-37109172IPR001471AP2/ERF domain
PRINTSPR003674.3E-11110121IPR001471AP2/ERF domain
PfamPF008471.5E-13110159IPR001471AP2/ERF domain
PRINTSPR003674.3E-11132148IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MEIALNRNDY VQEFMKALEP FMKVTSSPSS PSSSKAIPIT HDNQTLPVCN QTGPIGLNQL  60
TPTQILQIQT ELQLRQNQAR RGCSGHDLNV LNAKPTLMKK TNVTKPAKLY RGIRQRHWGK  120
WVAEIRLPKN RTRLWLGTFE TAEEAALAYD QAAHKIRGEN ARLNFPNIAF LGEYNQTLSP  180
SVNAKIEAIC NSSELPPSKL KKPAKTEEGF FGFHYMGHEL EQEREVPDNF GYRSGSSPES  240
DLTLFDFSSE CVKEDESFCM GLQKCPSFEI DWDAIEKLSG SI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-22108166160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00585DAPTransfer from AT5G65130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00000777001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009150596.10.0PREDICTED: ethylene-responsive transcription factor ERF057-like
RefseqXP_013647065.10.0ethylene-responsive transcription factor ERF057-like
SwissprotQ9FJQ21e-126ERF57_ARATH; Ethylene-responsive transcription factor ERF057
TrEMBLA0A078F5Z20.0A0A078F5Z2_BRANA; BnaA06g24080D protein
STRINGBra024358.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134991728
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65130.11e-103ERF family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]