PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00000783001
Common NameGSBRNA2T00000783001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family EIL
Protein Properties Length: 356aa    MW: 40463.6 Da    PI: 4.204
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00000783001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3164.99.1e-51361721125
                          XXXXXXXXXXXXXXXXXXXXXXX..XXXXX...XXXXXXX.........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                 EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaa..tgakksn.........ksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipe 79 
                          ++lkkrmwkd++l+++lk++k++      ++  t+    +         ++ e++rrkkm+r+QD++LkYM+k+mevc+a+GfvYgi+pe
  GSBRNA2T00000783001  36 DDLKKRMWKDRNLMCKLKQQKQDDHDLSYPSssTSPP--SsspsssaivRRAEASRRKKMARSQDSVLKYMMKIMEVCKARGFVYGIVPE 123
                          79********************987766665333333..2458888999***************************************** PP

                          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXX CS
                 EIN3  80 kgkpvegasdsLraWWkekvefdrngpaaisky...qaknlilsgessl 125
                          kgkpv+g+sdsLr+WWke+v+fd+++p+a+++y   +a++li++++s l
  GSBRNA2T00000783001 124 KGKPVTGSSDSLRRWWKENVQFDQTAPTAVADYltlAAAQLISQSKSLL 172
                          ***********************************99999999887765 PP
2EIN329.51.4e-09179247278354
                          XXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX......XXXXXXX.XXXXXXXXXXXXXXXXX CS
                 EIN3 278 ceqkedvegkkeskikhvqavkttagfpvvrkrkkkpsesakvsskevsrtcqssqfrgsetelifadknsisqney 354
                          ++   d eg+++++   ++ v+  +++ + +krk +++e+ ++ s+  ++tcq+s++++s+++l+f dkn ++ +e+
  GSBRNA2T00000783001 179 DD---DDEGEEDQE--PARLVDL-DQELMGNKRKGEFVEEGAMLSN--VYTCQNSSCPSSDVSLGFVDKNLRTGHEM 247
                          33...223333333..2233333.578999**************99..7************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048733.9E-4936168No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MVEVQDMEPL SPIQDDDDCE DEEDELDRVN EDISYDDLKK RMWKDRNLMC KLKQQKQDDH  60
DLSYPSSSTS PPSSSPSSSA IVRRAEASRR KKMARSQDSV LKYMMKIMEV CKARGFVYGI  120
VPEKGKPVTG SSDSLRRWWK ENVQFDQTAP TAVADYLTLA AAQLISQSKS LLKRLKISDD  180
DDEGEEDQEP ARLVDLDQEL MGNKRKGEFV EEGAMLSNVY TCQNSSCPSS DVSLGFVDKN  240
LRTGHEMECL YGTQEPIYQS SVSSDGLVRP MATSDDDYSA SSKGKDTIDY LNQDGNWLDY  300
LWFERLHDFN CSDQATTVDL NQLPDHSDSN PTVNEEEFSL WDMGWEDRDK YMSQD*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00000783001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013643097.11e-118ETHYLENE INSENSITIVE 3-like 5 protein
SwissprotQ9FJQ51e-79EIL5_ARATH; ETHYLENE INSENSITIVE 3-like 5 protein
TrEMBLA0A078F5Z60.0A0A078F5Z6_BRANA; BnaA06g24030D protein
STRINGBra024354.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16143412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65100.12e-82EIL family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]