PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00000846001
Common NameGSBRNA2T00000846001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 307aa    MW: 34111.1 Da    PI: 4.9164
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00000846001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.41.4e-171055148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg ++ eE+  +v+++++lG++ W++Ia++++ gRt++++k++w++++
  GSBRNA2T00000846001 10 RGEFSDEEEINIVRLHALLGNK-WSKIASHLP-GRTDNEIKNYWNTHM 55
                         899*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.36E-16163IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.7E-26159IPR009057Homeodomain-like
PROSITE profilePS5129426.926559IPR017930Myb domain
SMARTSM007171.7E-16957IPR001005SANT/Myb domain
PfamPF002495.9E-161054IPR001005SANT/Myb domain
CDDcd001674.74E-131255No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MNYLRPDIRR GEFSDEEEIN IVRLHALLGN KWSKIASHLP GRTDNEIKNY WNTHMRKKML  60
QMGIDPTTHE PRTNDLTPIL DVSQMLAAAF SNGQFGNSNL FNNNTALENH LKLQLIHKML  120
QMITPKAVPN INSFCTNSLI PKHEPVVNDF NTNSVNPKPE PGAGQLNAIG GQQVFINKSE  180
NEDFMPSFGH DWDGFEDNQL PGLVTVSKEN LKSAKPGTST TTEVNYKTGP DMMPGYYGDQ  240
LREIPSTGLI SVSPETSGLN YPGTTQHSSA SDVLEDWEKF LDDETSDSCW KSFLDLTSPT  300
SSPCPL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A8e-1325948105MYB PROTO-ONCOGENE PROTEIN
1mse_C8e-1325948105C-Myb DNA-Binding Domain
1msf_C8e-1325948105C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00000846001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1834921e-147AC183492.1 Brassica oleracea Contig G, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009108343.10.0PREDICTED: transcription factor MYB39-like
SwissprotQ8GWP01e-161MYB39_ARATH; Transcription factor MYB39
TrEMBLA0A078F7540.0A0A078F754_BRANA; BnaC08g10990D protein
STRINGBo8g049720.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122431730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17785.11e-164myb domain protein 39
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]