PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00000899001

Common Name

GSBRNA2T00000899001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WRKY

Protein Properties

Length: 295aa MW: 33182.4 Da PI: 7.5963

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00000899001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	110.1	1e-34	158	215	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCt+++C+vkk+vers +dp+vv++tYeg+Hnh+ GSBRNA2T00000899001 158 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCNVKKQVERSLQDPTVVITTYEGQHNHP 215 8********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF038130	2.4E-97	1	294	IPR017396	PWRKY transcription factor, group IIc
Gene3D	G3DSA:2.20.25.80	2.6E-36	142	217	IPR003657	WRKY domain
SuperFamily	SSF118290	3.4E-30	149	217	IPR003657	WRKY domain
PROSITE profile	PS50811	33.086	152	217	IPR003657	WRKY domain
SMART	SM00774	1.5E-40	157	216	IPR003657	WRKY domain
Pfam	PF03106	5.3E-27	158	215	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MSNETKDLYN YQYPSSFSLY EMMNLPSSAQ SSYGNNGFDH GLHSSPGAYD SLLQKTFGLS 60 PPSSEVFNSS INQESNLCAT NDVTGETPTR VSASSSSSEA DHPGEDCGKS QRKRELVEDG 120 REENRSSKTV DKTKKKEEKK EREPRVSFMT KSEVDHLEDG YRWRKYGQKA VKNSPYPRSY 180 YRCTTQKCNV KKQVERSLQD PTVVITTYEG QHNHPIPTNL RGSSAAAAMY SANFMNPRSL 240 KHDIFRTAAL DYGYGQSGYG SVNANPSSHQ EYRQGSEYEL LKEIFPSIFF KQEP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	6e-30	147	217	7	77	Probable WRKY transcription factor 4
2lex_A	6e-30	147	217	7	77	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00000899001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC246575	0.0	KC246575.1 Brassica napus WRKY transcription factor 28.2 (WRKY28.2) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013726857.1	0.0	probable WRKY transcription factor 28
Swissprot	Q8VWJ2	1e-155	WRK28_ARATH; WRKY transcription factor 28
TrEMBL	A0A078F786	0.0	A0A078F786_BRANA; WRKY transcription factor
STRING	Bo8g049940.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1524	26	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18170.1	1e-148	WRKY DNA-binding protein 28

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Kim SH, et al. Characterization of a Novel DWD protein that participates in heat stress response in Arabidopsis. Mol. Cells, 2014. 37(11): p. 833-40 [PMID:25358503] Zhao L, et al. KLU suppresses megasporocyte cell fate through SWR1-mediated activation of WRKY28 expression in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2018. 115(3): p. E526-E535 [PMID:29288215]