PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00001473001
Common NameGSBRNA2T00001473001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 330aa    MW: 37246.1 Da    PI: 4.6308
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00001473001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.31.1e-12571321894
                          --HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS..SEE..EE CS
                   B3  18 lpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgr..sefelvv 94 
                          lp  f     ++k+ +k +t+++  g++W++ l+   +  +ry+l +GWk+ +k+  L +g ++ F+ld++  ++f  ++
  GSBRNA2T00001473001  57 LPVCFN--SFLPKPLPKHVTVKSIYGKTWRMALRRcGGDAERYMLLNGWKRIAKDESLTTGNVLEFQLDDDgsMCF--NF 132
                          555554..245678999****************553444445*************************996523444..44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-1337135IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.77E-1637135IPR015300DNA-binding pseudobarrel domain
CDDcd100171.94E-1340135No hitNo description
PROSITE profilePS5086311.57540138IPR003340B3 DNA binding domain
SMARTSM010196.1E-1042136IPR003340B3 DNA binding domain
PfamPF023621.4E-1053128IPR003340B3 DNA binding domain
SuperFamilySSF1019364.9E-6224319IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-4225319IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.56229327IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MKPGFSFLLL PLFLILPLQE IDVFWFPFFV TVTPAEDCVP KFFRVYMPGI SGDDLELPVC  60
FNSFLPKPLP KHVTVKSIYG KTWRMALRRC GGDAERYMLL NGWKRIAKDE SLTTGNVLEF  120
QLDDDGSMCF NFSIYEPLTM CKRLRTTTSV QETEDADDVL VLSDDDDDDD FQDSDYSCAD  180
DNDASAEDDD HGVAAGDDHV ALDGSDDDED AEANHDDDRR YLDDRSNAFF RVKINPKKIS  240
QLRIPSKVIN DYGLSFSEAE SLNIIDPLVK KFGKLTKKIK VQTNGSVFIK GYGAIYRRNG  300
VRSTDKMICE LKKAGNNNVV HTIKFHVIK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.138080.0seed
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00569DAPTransfer from AT5G60130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00001473001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2347370.0AC234737.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH010D15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013713163.10.0B3 domain-containing protein At5g60130-like
SwissprotQ9LVG12e-90Y5013_ARATH; B3 domain-containing protein At5g60130
TrEMBLA0A078F7Z00.0A0A078F7Z0_BRANA; BnaA02g06480D protein
STRINGBo2g025080.11e-175(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49471843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60142.14e-44B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]