PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00001594001
Common NameGSBRNA2T00001594001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 1210aa    MW: 135541 Da    PI: 4.9043
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00001594001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3391.4e-1288188299
                          EEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                   B3   2 fkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                          +k lt+sd l +  ++  k+ + ++         +  ++  l+lede+g+ W ++++y k s+ y +t+ W+++vk+++L  gDfv +++
  GSBRNA2T00001594001  88 EKCLTTSDDLHRLVVTANKDAC-KYfplatvfR-S--TDNFLQLEDEEGKPWMFEFSYLKVSQIYEFTEAWSSYVKEKQLGIGDFVFIQR 173
                          5778888888776555555555.6667776532.2..34469***********************************************9 PP

                          -SSSEE..EEEEE-S CS
                   B3  85 dgrsefelvvkvfrk 99 
                          +++ + +l ++++r+
  GSBRNA2T00001594001 174 HRTVSSRLSIGFRRR 188
                          888777799999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.3E-1679186IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-983182IPR015300DNA-binding pseudobarrel domain
CDDcd100175.05E-986187No hitNo description
SMARTSM010190.004687189IPR003340B3 DNA binding domain
PfamPF023621.2E-1088189IPR003340B3 DNA binding domain
PROSITE profilePS508639.093125189IPR003340B3 DNA binding domain
PfamPF015821.8E-17339492IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SuperFamilySSF522003.79E-11342460IPR000157Toll/interleukin-1 receptor homology (TIR) domain
PROSITE profilePS501049.15378464IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SuperFamilySSF525402.22E-40501745IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009313.8E-17509709IPR002182NB-ARC
Gene3DG3DSA:3.40.50.3009.3E-7517547IPR027417P-loop containing nucleoside triphosphate hydrolase
PRINTSPR003649.9E-20519534No hitNo description
PRINTSPR003649.9E-20595609No hitNo description
PRINTSPR003649.9E-20686700No hitNo description
Gene3DG3DSA:3.40.50.3009.3E-7773824IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF520583.74E-308481070IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.103.5E-258491068IPR032675Leucine-rich repeat domain, L domain-like
PfamPF077254.5E-10909927IPR011713Leucine-rich repeat 3
PRINTSPR003649.9E-209991015No hitNo description
PROSITE profilePS5010311.00910781106IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007165Biological Processsignal transduction
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0043531Molecular FunctionADP binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1210 aa     Download sequence    Send to blast
MDEDDKEYWE ELLEFNRQPR PSGSTADDAG EGINAASFKG MDEDDKENPF SSPLVLNEHL  60
KKTQIGDEKK LNIPAGQQQQ QQQHNLCEKC LTTSDDLHRL VVTANKDACK YFPLATVFRS  120
TDNFLQLEDE EGKPWMFEFS YLKVSQIYEF TEAWSSYVKE KQLGIGDFVF IQRHRTVSSR  180
LSIGFRRRNN SLLYENPAPL TMSIGDGGSA LQSDNFQYNF QCHDPAPSTI SFMDGDAPLQ  240
LTPPFQSDNF PCHDPAPSTM SFEDGGAALQ LDPCQDPFPC HDLAPPTISF GDGGAAPRDC  300
IYLLADSVTS SETLEQPRVS GYSITGVDPI LVISCGYNQS SEERYFISYI FNELRLRGFA  360
PLGYDLSRNP VNGNQDLLDK SQLGIIIFSM NYVSSSECMD GFVALMDHSK ANELMLFPVF  420
FEVEFCNVKD QAGSFEKAFA QFENSVQASQ VLKWKAAVEE LTSTDRYHQY KKGDEVMLAK  480
NIVRDVQVNS KTGSNLTASL QLSHILSLLN SWQSSAPHIV GLWGMAGIGK TTFSREIFRT  540
QGERYDVCYF LPDFHQLCQT KGLNPLREEF LSKIFGEEKV FIDPCGTKLS FTRDRFRDKK  600
VLIVLDGVSN ARDAEVLVGG FGWFSGGHTI ILTSRNRQVL VKCNAKEIYE IKKLSESDSI  660
QLCRQFATEK NWKVRMSLIE ELVNYASGNP LALRALCSSI QKQCISDEEE HLSILHHHPP  720
IEIRDAFGGI FSELDDNEKN TFLDLACFFK GENKDHVVNI LDGCGFLTDL GISGLIDESL  780
ISLVDNRIEM PNVFQDMGRF VVRQEHEEAG KRSRLSDSSD IVDVLTNNSG TEIIEGIFLD  840
ASGLKLKLSS NVFEEMDRLR LLKLHYPTSE NDCKVSLPEG LLSLPDELRL LHWERYPLES  900
LPGNFNPENL VELNMPYSNL TKLWEGTENL EMLRRIILSH SRQLTDFSWL SMATNLEHID  960
LEGCTSLVEV NSSSILHHRK LTFLSLKGCS HLRIIPSTAH LESLEVLNLS GCSELEHLED  1020
FSPNLTKIYL AGTAIKEIPS SIVTLTRLVT LDVGNCNRLQ HLPPEINLKA VVGFTPSQPG  1080
QPVCTSYFHT GICSKGPACS SDHPTLSTHK NTSSIASETQ VHVELIRALT HENPSSNNLE  1140
EVSTKKPRIH RTTSFVTSGT LDLNQQEIDF SFFNQPESSP PLGASLSEFS RGGRSNKVFQ  1200
IFGVSVNYM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5teb_A1e-1333748611163Recognition of Peronospora parasitica 1
5teb_B1e-1333748611163Recognition of Peronospora parasitica 1
5teb_C1e-1333748611163Recognition of Peronospora parasitica 1
5teb_D1e-1333748611163Recognition of Peronospora parasitica 1
5teb_E1e-1333748611163Recognition of Peronospora parasitica 1
5teb_F1e-1333748611163Recognition of Peronospora parasitica 1
5teb_G1e-1333748611163Recognition of Peronospora parasitica 1
5teb_H1e-1333748611163Recognition of Peronospora parasitica 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.185930.0leaf
Functional Description ? help Back to Top
Source Description
UniProtDisease resistance protein that cooperates with RPP2B to confer resistance to Hyaloperonospora parasitica isolate Cala2. {ECO:0000269|PubMed:15165183}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00001594001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013614150.10.0PREDICTED: probable WRKY transcription factor 19 isoform X2
SwissprotF4JT780.0RPP2A_ARATH; Disease resistance protein RPP2A
TrEMBLA0A078F8C80.0A0A078F8C8_BRANA; BnaC03g63240D protein
STRINGBo00889s060.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM5462920
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12020.11e-142WRKY family protein
Publications ? help Back to Top
  1. Meyers BC,Morgante M,Michelmore RW
    TIR-X and TIR-NBS proteins: two new families related to disease resistance TIR-NBS-LRR proteins encoded in Arabidopsis and other plant genomes.
    Plant J., 2002. 32(1): p. 77-92
    [PMID:12366802]
  2. Sinapidou E, et al.
    Two TIR:NB:LRR genes are required to specify resistance to Peronospora parasitica isolate Cala2 in Arabidopsis.
    Plant J., 2004. 38(6): p. 898-909
    [PMID:15165183]
  3. Kempema LA,Cui X,Holzer FM,Walling LL
    Arabidopsis transcriptome changes in response to phloem-feeding silverleaf whitefly nymphs. Similarities and distinctions in responses to aphids.
    Plant Physiol., 2007. 143(2): p. 849-65
    [PMID:17189325]
  4. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]