PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00001826001

Common Name

GSBRNA2T00001826001, LOC106369361, LOC106431541

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

G2-like

Protein Properties

Length: 261aa MW: 28971.3 Da PI: 7.9247

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00001826001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.6	5.1e-32	31	84	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH++F++av+ LGG+++AtPk il++m+v gLt++hvkSHLQ+YR GSBRNA2T00001826001 31 PRLRWTPELHRCFLNAVDMLGGQHRATPKLILKMMDVRGLTISHVKSHLQMYRG 84 8****************************************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.0E-29	27	84	IPR009057	Homeodomain-like
PROSITE profile	PS51294	14.229	27	87	IPR017930	Myb domain
SuperFamily	SSF46689	1.79E-15	31	83	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.4E-24	31	84	IPR006447	Myb domain, plants
Pfam	PF00249	2.0E-9	32	83	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MGTCGGRNGN DVGFNGHGGG RVRPYVRSPV PRLRWTPELH RCFLNAVDML GGQHRATPKL 60 ILKMMDVRGL TISHVKSHLQ MYRGSKLTLG KSEESSLSSI RRRQDTEEDY LHDNLSLPSR 120 NDCLLGFHSF PLSSHSSLRG GRRENQTSQS GGGDDDDDFL HIINMEKTKE TTAFPSHQCH 180 KKTEKEKNKW ENSGKEQEEE DLSLSLSLNH HQWRSNGSSV SETSEAVSTC SAPFVFKDCF 240 ASSSPKIDLN LTLSVSLLSS *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	6e-19	32	86	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	6e-19	32	86	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	6e-19	32	86	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	6e-19	32	86	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00001826001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ386403	1e-60	FJ386403.1 Thellungiella halophila putative inositol phosphatase gene, partial cds; cyclin-like protein, putative microtubule-associated protein, putative C2H2 zinc finger protein, brassinosteroid receptor-like protein, putative transmembrane transporter, salt overly sensitive 1-like protein, valyl-tRNA synthetase-like protein, putative glutamate decarboxylase, putative peptide transporter, putative F-box protein, putative nitrate transporter, putative NADH dehydrogenase, putative Myb DNA binding proteins, putative C2H2 zinc finger proteins, putative F-box protein, SWI/SNF helicase-like protein, defensin-like proteins, and putative PPR repeat protein genes, complete cds; and unknown genes.
GenBank	HM222924	1e-60	HM222924.1 Thellungiella parvula phosphatase, cyclin J18, clathrin assembly protein-related protein, BPC1, SGR5/ATIDD15, leucine-rich receptor kinase, endomemebrane protein 70, salt overly sensitive 1, glutamate decarboxylae 4, oligopeptide transport protein, peptide transporter, and NADH-ubiquinone oxidoreductase B18 genes, complete cds; and unknown genes.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013664978.1	0.0	putative Myb family transcription factor At1g14600 isoform X1
Refseq	XP_013727789.1	0.0	putative Myb family transcription factor At1g14600 isoform X1
Refseq	XP_013727790.1	0.0	putative Myb family transcription factor At1g14600 isoform X2
Swissprot	Q700D9	2e-77	MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBL	A0A078FXY6	0.0	A0A078FXY6_BRANA; BnaA06g34360D protein
STRING	Bra024836.1-P	1e-175	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4694	18	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02060.1	4e-43	G2-like family protein

Link Out ? help Back to Top
Entrez Gene	106369361 \| 106431541

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]