PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00001870001

Common Name

GSBRNA2T00001870001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C2H2

Protein Properties

Length: 439aa MW: 48523.5 Da PI: 6.0813

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00001870001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.5	0.00045	120	139	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp+Cg +F++ ++ +H GSBRNA2T00001870001 120 FECPICGNPFKTEEEVSVHV 139 89************999995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF143503	2.22E-18	159	244	IPR018997	PUB domain
Pfam	PF09409	8.7E-18	163	231	IPR018997	PUB domain
CDD	cd09212	6.52E-21	163	247	No hit	No description
SMART	SM00580	3.7E-23	164	231	IPR018997	PUB domain
SuperFamily	SSF54236	3.62E-12	304	413	IPR029071	Ubiquitin-related domain
PROSITE profile	PS50033	10.161	329	413	IPR001012	UBX domain
Gene3D	G3DSA:3.10.20.90	1.3E-7	329	412	No hit	No description
Pfam	PF00789	2.7E-4	330	380	IPR001012	UBX domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence Send to blast
MDDVKDKLKG FMKKVNLSSS SGKFKGSGRV LGSSSSSAPV NPIQNRFNPP QSPNPNPTPR 60 PTKPSPSPSA PLPEKPVSSG SEKKPDPDPV RAPPQDGFDP YGAFITSSNR SQNGYSLNMF 120 ECPICGNPFK TEEEVSVHVE ATYEPASEVE KLVVVYLSGK PTESSVDVLL RLLKNIVKEP 180 ENGKFRKIRM SNAKIKEAIG DVAGGVELLE LVGFELKEEN DEVWAVMDVP GGDQTQLINE 240 VVGMLEKRND EVLPVEPVAA APKKIDREIR VFFSVAENVA SRIEVPDSFY SLSADEIKRE 300 ADLRRKKIAE SQLLIPRSYK EKQARAARKR YKRSMIRVQF PDGVVLQGVF APWEPTFALY 360 EFVSSALKEP SLQFELLDPV LVKRRVIPHT PAPGQKPRTL EDEELVPSAL IKFRPIETSS 420 LVYTGLCNEL LEISEPLT*

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence Send to blast

MDDVKDKLKG FMKKVNLSSS SGKFKGSGRV LGSSSSSAPV NPIQNRFNPP QSPNPNPTPR  60
PTKPSPSPSA PLPEKPVSSG SEKKPDPDPV RAPPQDGFDP YGAFITSSNR SQNGYSLNMF  120
ECPICGNPFK TEEEVSVHVE ATYEPASEVE KLVVVYLSGK PTESSVDVLL RLLKNIVKEP  180
ENGKFRKIRM SNAKIKEAIG DVAGGVELLE LVGFELKEEN DEVWAVMDVP GGDQTQLINE  240
VVGMLEKRND EVLPVEPVAA APKKIDREIR VFFSVAENVA SRIEVPDSFY SLSADEIKRE  300
ADLRRKKIAE SQLLIPRSYK EKQARAARKR YKRSMIRVQF PDGVVLQGVF APWEPTFALY  360
EFVSSALKEP SLQFELLDPV LVKRRVIPHT PAPGQKPRTL EDEELVPSAL IKFRPIETSS  420
LVYTGLCNEL LEISEPLT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ifw_A	4e-12	284	413	23	146	Tether containing UBX domain for GLUT4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	326	334	ARKRYKRSM

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.9702	0.0	leaf\| seed

Functional Description ? help Back to Top
Source	Description
UniProt	Facilitates the interaction of SYP31 and CDC48A, thereby regulating an CDC48A membrane-associated function (Ref.8). Appears to act as a negative regulator mediating the powdery mildew-plant interaction (PubMed:19176722, PubMed:23301616). {ECO:0000269\|PubMed:19176722, ECO:0000269\|PubMed:23301616, ECO:0000269\|Ref.8}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00001870001

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced in response to powdery mildew and by benzothiadiazole (BTH) treatment. {ECO:0000269\|PubMed:19176722}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC254607	1e-70	AC254607.1 Capsella rubella clone CAP08-M18, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009101328.1	0.0	PREDICTED: plant UBX domain-containing protein 2
Swissprot	Q9ZU93	0.0	PUX2_ARATH; Plant UBX domain-containing protein 2
TrEMBL	A0A078FSZ6	0.0	A0A078FSZ6_BRANA; BnaA06g34740D protein
STRING	Bra024866.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9835	16	18

Publications ? help Back to Top
Suzuki T,Park H,Till EA,Lennarz WJ The PUB domain: a putative protein-protein interaction domain implicated in the ubiquitin-proteasome pathway. Biochem. Biophys. Res. Commun., 2001. 287(5): p. 1083-7 [PMID:11587532] Rancour DM,Park S,Knight SD,Bednarek SY Plant UBX domain-containing protein 1, PUX1, regulates the oligomeric structure and activity of arabidopsis CDC48. J. Biol. Chem., 2004. 279(52): p. 54264-74 [PMID:15498773] Chandran D,Rickert J,Cherk C,Dotson BR,Wildermuth MC Host cell ploidy underlying the fungal feeding site is a determinant of powdery mildew growth and reproduction. Mol. Plant Microbe Interact., 2013. 26(5): p. 537-45 [PMID:23301616] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]