PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00001962001

Common Name

GSBRNA2T00001962001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

MYB_related

Protein Properties

Length: 102aa MW: 11033.6 Da PI: 11.1145

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00001962001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.4	3.4e-08	5	55	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 ++ WT+ E l +v+ +G g W+ I + k R+ ++k++w++ GSBRNA2T00001962001 5 KQMWTPKEVTALRAGVRAYGIGKWRGILSDSKfgralKARSNVDLKDKWRN 55 678**********************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.96E-14	3	63	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.679	4	57	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	1.0E-12	4	56	IPR009057	Homeodomain-like
CDD	cd11660	1.92E-16	6	56	No hit	No description
Pfam	PF13921	4.6E-5	8	58	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 102 aa Download sequence Send to blast
MGGRKQMWTP KEVTALRAGV RAYGIGKWRG ILSDSKFGRA LKARSNVDLK DKWRNISAAT 60 FGSRKKKVLA IVAVANDNDG EQEIVPASPA NGDNEGLFAR F*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269\|PubMed:15060584}.

Functional Description ? help Back to Top
Source	Description
UniProt	Binds preferentially double-stranded telomeric repeats, but it can also bind to the single G-rich telomeric strand. {ECO:0000269\|PubMed:19102728}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00001962001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013603747.1	2e-65	PREDICTED: telomere repeat-binding factor 3-like isoform X1
Refseq	XP_013603748.1	1e-65	PREDICTED: telomere repeat-binding factor 3-like isoform X2
Refseq	XP_013752321.2	2e-65	telomere repeat-binding factor 3-like
Swissprot	Q9M2X3	1e-23	TRB3_ARATH; Telomere repeat-binding factor 3
TrEMBL	A0A078FT77	2e-66	A0A078FT77_BRANA; BnaC08g21430D protein
TrEMBL	A0A3P6GTB0	2e-64	A0A3P6GTB0_BRAOL; Uncharacterized protein
STRING	Bo8g079140.1	5e-65	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49850.1	6e-26	telomere repeat binding factor 3

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293] Denis E, et al. WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis. Plant J., 2017. 90(3): p. 560-572 [PMID:28218997] Kotliński M, et al. Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain. Plant Physiol., 2017. 174(1): p. 27-34 [PMID:28298478]