PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00002182001
Common NameGSBRNA2T00002182001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 578aa    MW: 64627.6 Da    PI: 9.5329
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00002182001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding292.4e-093787346
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqk 46
                         +W t E++ll++avk++G  +W+++a+++          +++ +c+ ++++
  GSBRNA2T00002182001 37 AWGTCEELLLACAVKRHGFCDWDSVAAEVRtrtslsaVFLSADDCRQKYRD 87
                         799***************************666666666667777777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.1E-43270IPR009057Homeodomain-like
SMARTSM007171.5E-43491IPR001005SANT/Myb domain
SuperFamilySSF466892.74E-53590IPR009057Homeodomain-like
PfamPF002499.6E-93788IPR001005SANT/Myb domain
CDDcd001675.13E-64288No hitNo description
SuperFamilySSF473702.35E-17248362IPR001487Bromodomain
Gene3DG3DSA:1.20.920.104.6E-16250362IPR001487Bromodomain
SMARTSM002971.1E-19255364IPR001487Bromodomain
CDDcd043694.05E-15266359No hitNo description
PfamPF004393.8E-10268348IPR001487Bromodomain
PROSITE profilePS5001412.706274345IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    Send to blast
MTKEEAAASY SMNDICSNDH NTDDNNNTNL KQHEGRAWGT CEELLLACAV KRHGFCDWDS  60
VAAEVRTRTS LSAVFLSADD CRQKYRDLQR RFKESADGDN DAAEEEGGND IPWLEELRSL  120
RVAELRREVE QYDVSILSLQ LKVKKLEEER DGGEKLDLVE EEEERKRERS ENDGGDKAEE  180
SERENRSMNE SNSTGAGEKT VGEDEPGRTR GDDVDPDPVN TAEERSGASD SGELGESGTS  240
GRKWKRKRRK DSDGEIRSAA SESQPLIRLL DLIRSHPRGS LFERRVRSQE TTDYKRLVKQ  300
HLDIETIQRK LTQGSYDSSK LTFYRDLLLL FANVIVFFPS SSLESMAAHE LRAIVSEEMR  360
KESGKSSPRL FKASPGMTSI KAEAAETSEQ KSSAPLVVCK RRRFVSAKAK ASPSSSSFSQ  420
KEETKEEMLS EENENVETGG RSSKRTANNT KTGKGKSKQK EAEEAKTEKK VVVSSDKKKS  480
VADFLKRIKK SSPQKEDKDQ NKSKKESKPK PRELRSNNVG KKKKAEVENA ATPAKRAPGR  540
PPQKKNVEAV ATASGKRGRE SGSTGKDNKQ PKKRSRR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1241249RKWKRKRRK
2241250RKWKRKRRKD
3244249KRKRRK
4245250RKRRKD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.255620.0flower| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00002182001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013636826.10.0PREDICTED: bromodomain and WD repeat-containing protein 1
TrEMBLA0A078FTH80.0A0A078FTH8_BRANA; BnaC04g03690D protein
STRINGBo4g021680.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41231947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.11e-164DNA-binding bromodomain-containing protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]