PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00002432001
Common NameGSBRNA2T00002432001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family AP2
Protein Properties Length: 291aa    MW: 32520.9 Da    PI: 7.8216
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00002432001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.79e-16143202155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV+ ++++gr++A+++d  ++  g  +r ++++lg ++ +e+Aa+a++ a+ k++g
  GSBRNA2T00002432001 143 SQYRGVTKHRWTGRYEAHLWDnSCKkEGqsRRgRQVYLGGYDDEEKAARAYDLAAMKYWG 202
                          78*******************988886677557*************************98 PP
2AP241.63e-13245290149
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaa 49 
                          s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a
  GSBRNA2T00002432001 245 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIA 290
                          57****************988532...5******************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.30E-21143212No hitNo description
PfamPF008471.5E-11143202IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-17143212IPR016177DNA-binding domain
PROSITE profilePS5103219.006144210IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-16144212IPR001471AP2/ERF domain
SMARTSM003803.1E-29144216IPR001471AP2/ERF domain
SuperFamilySSF541716.15E-12245290IPR016177DNA-binding domain
PfamPF008471.4E-8245288IPR001471AP2/ERF domain
CDDcd000181.32E-16245290No hitNo description
PROSITE profilePS5103215.501246290IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.3E-12246290IPR001471AP2/ERF domain
SMARTSM003801.2E-11246290IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MLNRLSPPGY LLYEQAVSTP QYSNLDTNLS HDYGGSVSVF KSWLGQGTPT FPVSNTYVSG  60
EGSTSNTSNF SHEETDYNTS GSTLLLTLSH GAASDLINEL NVSVPVEEPV KVDEKRKSLV  120
GKSQAKEPVE TRKSVDSLGQ RTSQYRGVTK HRWTGRYEAH LWDNSCKKEG QSRRGRQVYL  180
GGYDDEEKAA RAYDLAAMKY WGPTTHLNFP LSNYEKEIEE LNNMTRQEFV AMLRRNSSGF  240
SRGASIYRGV TRHHQHGRWQ ARIGRVAGNK DLYLGTFSTQ EEAAEAYDIA *
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, seedlings, inflorescence, and siliques. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00002432001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013746829.20.0AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ1PFE11e-175AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A078FZ360.0A0A078FZ36_BRANA; BnaC03g31040D protein
STRINGBo2g076920.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM117472532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-159AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]