PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00002593001
Common NameGSBRNA2T00002593001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 224aa    MW: 24270.9 Da    PI: 8.8089
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00002593001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.63e-10165212455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR++i +++  L++l+P +    ++   Ka +L + ++Y++sLq
  GSBRNA2T00002593001 165 SHSLAERARREKISERMTMLQDLVPGC----NRITGKAVMLDEIINYVQSLQ 212
                          8**************************....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.49E-15159217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.27E-11159215No hitNo description
Gene3DG3DSA:4.10.280.102.2E-16161216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.624161211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-7165212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-10167217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MEKQTLKYLP LGQSDPFGNG NGNEGTIGDL LGRFCNPQES FSPGIQLPPY PGQFGSDRES  60
NKSSLLDPDS DRVPTTKPNS RKRKSIPVGN GKDSPASSSL TASHSKVSGE NVVSKDGKRS  120
KQDEAGSSKN VIDKCDDSKG DNKDDAKPTK DYIHVRARRG QATDSHSLAE RARREKISER  180
MTMLQDLVPG CNRITGKAVM LDEIINYVQS LQRQVDVGGS DHL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17984SRKRKS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.139950.0seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00002593001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009106418.11e-154PREDICTED: transcription factor bHLH77-like
SwissprotQ9LK481e-115BH077_ARATH; Transcription factor bHLH77
TrEMBLA0A078FYB41e-162A0A078FYB4_BRANA; BnaA01g23600D protein
STRINGBra028335.1-P1e-154(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM74062039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23690.11e-106bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]