PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00002665001
Common NameGSBRNA2T00002665001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 307aa    MW: 32761.1 Da    PI: 6.5157
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00002665001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.17.5e-09159203554
                          HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                          h+++Er RR+ri +++  L+el+P+ +      K + a++  + v+Y+k L
  GSBRNA2T00002665001 159 HSIAERLRRERIAERIRALQELVPTvN------KTDRAAMIDEIVDYVKFL 203
                          99***********************55......9**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-14152213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.802154203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-14156213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-6159203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-10160209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MASNNNNLSE QPPSDDFFEQ ILGISNFSAS SSSGGLSGLP GGLSGGVGTP PPMMLQLGSG  60
EEGSHHNHMG GGGGGPLGFH NGMFPLGLSL DQGGKGQGFL KPDGSGKRFQ DDVVDNRCSS  120
MKPVFHGQPM TQPAPPMPHQ QSSIRPRVRA RRGQATDPHS IAERLRRERI AERIRALQEL  180
VPTVNKTDRA AMIDEIVDYV KFLRLQVKVL SMSRLGGAGA VAPLVTEMPL SSSTEDETQA  240
VWEKWSDDGT ERQVAKLMEE NVGAAMQLLQ SKALCIMPVS LAMAIYHSQP PDTSSSVVKP  300
EMNPPQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1163168RLRRER
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00002665001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3531530.0AK353153.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-21-H10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013697598.10.0transcription factor bHLH7-like
RefseqXP_013719235.10.0transcription factor bHLH7-like
SwissprotQ93Y001e-162BH007_ARATH; Transcription factor bHLH7
TrEMBLA0A078G0K60.0A0A078G0K6_BRANA; BnaC05g01660D protein
STRINGBo5g003580.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16112888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03040.11e-144bHLH family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]