PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00002814001
Common NameGSBRNA2T00002814001, LOC106402310
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 408aa    MW: 44842.5 Da    PI: 8.7188
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00002814001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.38.5e-114873126
                         --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                         ++++ C+f++rtG C yG++C+++H+
  GSBRNA2T00002814001 48 PGERDCQFYLRTGLCGYGSTCRYNHP 73
                         5789*********************9 PP
2zf-CCCH36.67.6e-1292116327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          ++ C ++++tG CkyG++Ck++H++
  GSBRNA2T00002814001  92 QPDCEYYLKTGACKYGSTCKYHHPK 116
                          789********************96 PP
3zf-CCCH38.51.9e-12136161227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++C++++rtGtC++G  CkF+H++
  GSBRNA2T00002814001 136 GEKPCPYYLRTGTCRFGVACKFHHPQ 161
                          689*********************97 PP
4zf-CCCH277.5e-09272292525
                          --SGGGGTS--TTTTT-SS-S CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                           Crff+ tGtCkyG+ Ck+ H
  GSBRNA2T00002814001 272 QCRFFMNTGTCKYGEHCKYTH 292
                          6******************88 PP
5zf-CCCH26.61e-08316341126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          +++++C  f  +G+Ck+G++C+F H+
  GSBRNA2T00002814001 316 PGQPPCGSFKSYGFCKFGPNCNFDHS 341
                          5799*********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.9E-54774IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.0044775IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-84973IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.13E-55175IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-45372IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.80289117IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-689116IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-992116IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-694117IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-495115IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.29E-7133163IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.939134162IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-6134161IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-10136161IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.3E-6138161IPR000571Zinc finger, CCCH-type
SMARTSM003560.021267294IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.441267295IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-6269292IPR000571Zinc finger, CCCH-type
PfamPF006429.7E-7271292IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-5273292IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.737315343IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-4315342IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-6317341IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-5318343IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-4320341IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MRLMSDTHHV QSSTGSVRSS QKIEDAFRKM KVNDGNGVEQ SDPYPDRPGE RDCQFYLRTG  60
LCGYGSTCRY NHPTNLPQVM YYNEELPERI GQPDCEYYLK TGACKYGSTC KYHHPKDRNG  120
AEPVLFNVLN LPMRQGEKPC PYYLRTGTCR FGVACKFHHP QPDNGHSTAA AAAAAYGMST  180
FPSAGLHHAG GLTMVPTYGT LPRPQLPQSY VMVSPSQGLL PPQSWTTYMG ASNSMYGVKN  240
QVYYSGSSAP MPMGVTLNGG DLSERSEQQQ QQCRFFMNTG TCKYGEHCKY THLGVRVSPP  300
PPPPSFINPF VLPARPGQPP CGSFKSYGFC KFGPNCNFDH SYPTGLPMPS SLASPYPSHV  360
SSNYQRISPA PSRSGSKAMP NDKPDVKKEK PGTEKPEQVQ DLSSPRS*
Functional Description ? help Back to Top
Source Description
UniProtPossesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269|PubMed:18582464}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00002814001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013698471.10.0zinc finger CCCH domain-containing protein 3
SwissprotQ94AD90.0C3H3_ARATH; Zinc finger CCCH domain-containing protein 3
TrEMBLA0A078FYM90.0A0A078FYM9_BRANA; BnaC05g03020D protein
STRINGBo5g005120.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23802675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.20.0C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]