PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00003261001
Common NameGSBRNA2T00003261001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 372aa    MW: 40674.2 Da    PI: 7.987
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00003261001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.00026121144123
                          EEETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                          ++C+ Cg+ F+   +L++H  + H
  GSBRNA2T00003261001 121 FSCTTCGEIFPKTNLLEHHFAVkH 144
                          89*****************87666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512576124No hitNo description
PROSITE profilePS501579.016121149IPR007087Zinc finger, C2H2
PROSITE patternPS000280123144IPR007087Zinc finger, C2H2
SuperFamilySSF563991.15E-12146193No hitNo description
SuperFamilySSF563991.15E-12221370No hitNo description
Gene3DG3DSA:3.90.228.107.1E-5300370IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MAARKLGSLL RQHFFSLFFL FVGCFFFPKE GDCKQKKRKK NLRTVSSGSG SGLSSSWLSL  60
KRFLLSTTRI SKPRSQTHLN GQLTSTLTSA RSSHNSLVTL VQPDPEPRVE NGLSDDSEEI  120
FSCTTCGEIF PKTNLLEHHF AVKHAVTELT DGESSTNIVK IIFKSGWPDL NNKAPSIHRI  180
LKIHNSPKIL ARFEEYREFV KAKAARTSSG GGGGGRRWDD ERCVADGNEL LRFYCSTFMC  240
DLGQNGNSNL CGHQYCSVCG IIGSGFSPKL DGIATLATGW RGHAAVPEEV EEEFGFMNVK  300
RAMLVCRVVA GRVGCDLIGD DDVDKSDGGY DSLVGEGSGS RSGALLRIDD EELLVFNPRA  360
VLPCFVIVYT V*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13539KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00003261001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3531330.0AK353133.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-11-B23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013744269.10.0uncharacterized protein BNAC04G40700D
TrEMBLA0A078IJY00.0A0A078IJY0_BRANA; BnaA04g28490D protein
STRINGBra039993.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79192640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.11e-158C2H2 family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]