PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00003406001
Common NameGSBRNA2T00003406001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 254aa    MW: 28678.4 Da    PI: 9.5732
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00003406001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM110.32.3e-34141551128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee...vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk. 79 
                          lp+G++F+P+d+e++  +L++kv+++k      ++  e   +++   +i++++P++Lp  v+++ +  +fF++ +k+y+tg+rk+r+++ 
  GSBRNA2T00003406001  14 LPAGVKFDPSDKEIL-MHLEAKVSSDKrklhplID--EfipTLEGEnGICYTHPEKLPVGVSKDGQVRHFFHRPSKAYTTGTRKRRKVSt 100
                          799***********9.89*****999956644322..22222333336**********8888888889******************7333 PP

                  NAM  80 .....sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                               + +W++tgk+++vls ++ + g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  GSBRNA2T00003406001 101 deeghETRWHKTGKTRPVLS-QSGEAGFKKILVLYtnYGRQKKPEKTNWVMHQYHL 155
                          45444788************.8889**********6658***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-358174IPR003441NAC domain
PROSITE profilePS5100531.53414174IPR003441NAC domain
PfamPF023657.1E-1515155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MKFKVGSIKD LPSLPAGVKF DPSDKEILMH LEAKVSSDKR KLHPLIDEFI PTLEGENGIC  60
YTHPEKLPVG VSKDGQVRHF FHRPSKAYTT GTRKRRKVST DEEGHETRWH KTGKTRPVLS  120
QSGEAGFKKI LVLYTNYGRQ KKPEKTNWVM HQYHLGHSED EKDGEPVLSK VFYQTQPRQC  180
GGSTETKPKN LVNLNRFSYE NLQGGFSYEH GGKSEDTTQV IRELVVRDGD GSCSFLSFTC  240
DASKGKDSFM KNQ*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in protoxylem and elongating interfascicular fiber cells of elongating internodes, developing metaxylem cells and interfascicular fibers of non-elongating internodes and developing secondary xylem of roots. {ECO:0000269|PubMed:18952777}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers. Is a direct target of SND1. {ECO:0000269|PubMed:18952777}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00003406001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0864760.0AY086476.1 Arabidopsis thaliana clone 25342 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009113660.10.0PREDICTED: NAC domain-containing protein 10
RefseqXP_013718299.10.0NAC domain-containing protein 10
SwissprotF4HY611e-174NAC10_ARATH; NAC domain-containing protein 10
TrEMBLA0A078JS610.0A0A078JS61_BRANA; BnaAnng33660D protein
STRINGBra032910.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20122881
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28470.11e-177NAC domain containing protein 10
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]