PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00003886001
Common NameGSBRNA2T00003886001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WRKY
Protein Properties Length: 519aa    MW: 57412.8 Da    PI: 8.1013
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00003886001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.42.3e-31170227260
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                          dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk  ers+ +++++ei+Y+g+H+h+k
  GSBRNA2T00003886001 170 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKVFERSH-EGQITEIVYKGTHDHPK 227
                          8***************************************9.***************85 PP
2WRKY106.41.4e-33332390159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK+v+g+++prsYY+Ct +gCpv+k+ver+++dpk+v++tYeg+Hnh+
  GSBRNA2T00003886001 332 LDDGYRWRKYGQKVVRGNPNPRSYYKCTATGCPVRKHVERASHDPKAVITTYEGKHNHD 390
                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.078164228IPR003657WRKY domain
SuperFamilySSF1182908.89E-25167228IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-26168228IPR003657WRKY domain
SMARTSM007745.5E-33169227IPR003657WRKY domain
PfamPF031065.2E-24170226IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.6E-37317392IPR003657WRKY domain
SuperFamilySSF1182902.22E-29324392IPR003657WRKY domain
PROSITE profilePS5081138.664327392IPR003657WRKY domain
SMARTSM007748.6E-39332391IPR003657WRKY domain
PfamPF031064.6E-26333390IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MDPDVSNRVD CSESRRDSSG GGARYKLMSP AKLPISRSTC ITTIPPGLSP TSFLESPVLL  60
SNIKAEPSPT TGSLFKPPQA VHANSSSYTA RTIHQNILDE KNSNESFEFR PPPASTMFYA  120
ELVDKQRSEA HSFKHSPSSA TDAAASSNEI SPQTADQDES RGSAPTILAD DGYNWRKYGQ  180
KHVKGSEFPR SYYKCTHPNC EVKKVFERSH EGQITEIVYK GTHDHPKPQP SRRNSGGLVM  240
PAQEERLDKN SPLNGRDEKG SSLYNMSPPV EQIGNDDGGD LGMSNKNNDD VDENDPFSKR  300
RKVDGGMEVT ALVKPIREPR VVVQTLSEVD ILDDGYRWRK YGQKVVRGNP NPRSYYKCTA  360
TGCPVRKHVE RASHDPKAVI TTYEGKHNHD VPMARSNNNS HHELSAPRFR PEESADAVIL  420
DLGVGIASGG PDHTSNEHQQ QQETNIRSEF VHQIQTNGAN GFMFNTIWSL EEGGSQQANQ  480
SNTTTTKRKK KTKGSLLPLF ILILLRLGMK QNFVLCNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-37168392877Probable WRKY transcription factor 4
2lex_A8e-37168392877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00003886001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5931360.0KM593136.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY20) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013640669.10.0probable WRKY transcription factor 20
SwissprotQ93WV00.0WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A078JVL60.0A0A078JVL6_BRANA; BnaCnng68630D protein
STRINGBo3g021460.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31332867
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.20.0WRKY family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]