PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00003923001
Common NameGSBRNA2T00003923001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 535aa    MW: 60892.3 Da    PI: 8.243
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00003923001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.63e-053553881755
                          HHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  17 NsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                          N++f+ Lr ++P+ +       ++K eiL  +++Y+++L+
  GSBRNA2T00003923001 355 NEKFNVLRAMVPTvN------EVDKEEILNNTIKYLQELE 388
                          9************55......8***************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.8E-4723208IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS508889.655338387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-6348393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-8353402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.9E-9355398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MSLTMDDGAE APRGRRIRRN SLLSKQLAVA VKSVRWSYAI FWSSSPTQSG VLEWGEGCYN  60
GEMKKRKKRY EVHYKHVLQR SNQLRELYLC MREGDSTNTI SATDDGYHNC NSKTSMLLSP  120
DDLSDEEWYY VVSMSYVFSP SQCLPGRALA TGETIWLCNA QYADSKLFSR SLLARTVVCF  180
PYLGGVIELG VTELISEDPN LLQHIKSCLL ETLKPDCPSN NFSAHQDNDD DKKNQMKIKI  240
KNQQIQFGIS DLMLDEDLHY KRTVSTLLKY AADKSKMKNS HHRQPELVSS NSGSSFLRWK  300
QPDSNLLLKY SNSQNVLRKI LHDVPLMHSV DTKKMSTNKM FGLNQDDPSV KRKENEKFNV  360
LRAMVPTVNE VDKEEILNNT IKYLQELEER VEELESCMGS VNFVGKQRKT KKSLNDSVLI  420
EETSGNYDDS TKIDGNSGET DQVTVLRDET HLRVKLKETE VVMEVRCSYR DYIVADIMET  480
LSKLHMDAFS VRSHTLNGFL TLNLKAKLRG AAVASVGMIK RELRRVIGES TRIT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A6e-12232099192Transcription factor MYC3
4rqw_B6e-12232099192Transcription factor MYC3
4rs9_A6e-12232099192Transcription factor MYC3
4yz6_A6e-12232099192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16367KKRKK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in developing seeds. Also detected in stems and leaves. {ECO:0000269|PubMed:12679534, ECO:0000269|PubMed:8980509}.
Functional Description ? help Back to Top
Source Description
UniProtTrancsription activator, when associated with MYB75/PAP1 or MYB90/PAP2. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00003923001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936640.0AB493664.1 Arabidopsis thaliana At4g00480 mRNA for hypothetical protein, partial cds, clone: RAAt4g00480.
GenBankAF2516970.0AF251697.1 Arabidopsis thaliana putative transcription factor BHLH12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013735272.10.0transcription factor MYC1-like
SwissprotQ8W2F10.0BH012_ARATH; Transcription factor MYC1
TrEMBLA0A078JYE60.0A0A078JYE6_BRANA; BnaCnng68660D protein
STRINGBra000970.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM117701832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00480.10.0bHLH family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]