PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00004355001

Common Name

GSBRNA2T00004355001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

ZF-HD

Protein Properties

Length: 258aa MW: 29515.8 Da PI: 9.2399

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00004355001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	98.1	6.8e-31	80	135	2	58
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 ++v Y+eC++NhAas Ggh+vDGCgEfm+s geegta++l CaAC+CHR+FHR+e + GSBRNA2T00004355001 80 RRVSYRECQRNHAASSGGHVVDGCGEFMSS-GEEGTAESLLCAACDCHRSFHRKEFN 135 5799***********************9.999******************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	7.0E-29	68	137	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	6.1E-29	82	133	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	26.663	84	133	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	5.8E-29	84	133	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	8.22E-18	186	254	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.1E-28	187	255	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	2.7E-28	193	250	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MEVREKKDDK IEMERRQSSA NQNIQDHRLP PYTYSQTADK EKPTTKRNGS DPDPDLDTNP 60 TSIAPAPRSY ARPQTTSPTR RVSYRECQRN HAASSGGHVV DGCGEFMSSG EEGTAESLLC 120 AACDCHRSFH RKEFNSFGHS QRPLINRHVS PIMMSFGGGG GGRDPAESST EDLNRFHQAL 180 SGNGVDQFQY HPKKRFRTKF NQEQKERMFE FAEKIGWRMN KTEDEEVNRF CREINVKRQV 240 FKVWMHNNKQ AAKKKET*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh5_A	2e-19	193	252	17	76	ZF-HD homeobox family protein
1wh7_A	2e-19	194	249	18	73	ZF-HD homeobox family protein
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.10044	0.0	flower\| microspore-derived embryo\| seed

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, stems, flowers and inflorescence. {ECO:0000269\|PubMed:16428600}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00004355001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC232550	0.0	AC232550.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH011J16, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013695813.1	0.0	zinc-finger homeodomain protein 6-like
Swissprot	Q9ZPW7	1e-145	ZHD6_ARATH; Zinc-finger homeodomain protein 6
TrEMBL	A0A078JVS0	0.0	A0A078JVS0_BRANA; BnaAnng34110D protein
STRING	Bra037224.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6515	25	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G18350.1	1e-142	homeobox protein 24

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]