PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00004515001
Common NameGSBRNA2T00004515001, LOC106439563
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family WOX
Protein Properties Length: 354aa    MW: 40197.6 Da    PI: 7.4431
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00004515001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox69.34.7e-2276135357
                          --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                          +R+++t++ql++Leel+++ +r+psa+++++++++l    +++ ++V++WFqN++a+e++
  GSBRNA2T00004515001  76 SRWNPTPDQLKALEELYQQgTRTPSADHIQQITAQLrrygKIEGKNVFYWFQNHKARERQ 135
                          7*****************99**************************************97 PP
2Wus_type_Homeobox115.23.1e-3775137365
    Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                          ++RW+Ptp+Q+k Leely++G+rtP++++iq+ita+L++yGkie+kNVfyWFQN+kaRerqk+
  GSBRNA2T00004515001  75 SSRWNPTPDQLKALEELYQQGTRTPSADHIQQITAQLRRYGKIEGKNVFYWFQNHKARERQKR 137
                          79***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007111.04671136IPR001356Homeobox domain
SMARTSM003898.3E-673140IPR001356Homeobox domain
SuperFamilySSF466891.88E-1273141IPR009057Homeodomain-like
PfamPF000469.1E-2076135IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.2E-976135IPR009057Homeodomain-like
CDDcd000863.43E-677137No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MWMMGYNEGG ADSFNGGRKL RPLIPRLSSC PTATGNTNSD HRFNMAVVTT MTAEQNKREL  60
MMLNSEPQHP PAMVSSRWNP TPDQLKALEE LYQQGTRTPS ADHIQQITAQ LRRYGKIEGK  120
NVFYWFQNHK ARERQKRRRQ MENGHDESVV TTTSLVSNQG FDKKDSKGYK VEHTKNWICS  180
VGCDTQQEKP HDHHHQEEPV SIAMVATKRN GRHGGDEIQS FPVRNARWHM MQLPPGLYPS  240
SQQQHNNHQL NLNSTTVSLN LSTSNSNVPA AKDTVTFSPS FLRTRGARNT EACDDNKDQE  300
QHEDCSNGEL EHQEQTLELF PLRKEGFCSN GGDDGKEKES GIQCFYEFLP LKN*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Specifically expressed during initiation of the shoot apical meristem, when cotyledonary primordia arise at the flanks of the apical embryo domain phase. Confined to the initiating vascular primordium of the cotyledons during heart and torpedo stages, but only weakly expressed during bent cotyledon stage. {ECO:0000269|PubMed:14711878}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00004515001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2513940.0AY251394.1 Arabidopsis thaliana WOX1 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009135563.10.0PREDICTED: WUSCHEL-related homeobox 1-like isoform X1
RefseqXP_013736498.10.0WUSCHEL-related homeobox 1 isoform X1
SwissprotQ6X7K00.0WOX1_ARATH; WUSCHEL-related homeobox 1
TrEMBLA0A078IS840.0A0A078IS84_BRANA; BnaAnng11050D protein
TrEMBLA0A398A1R70.0A0A398A1R7_BRACM; Uncharacterized protein
TrEMBLM4CBW40.0M4CBW4_BRARP; Uncharacterized protein
STRINGBra001694.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73972741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.10.0WUSCHEL related homeobox 1
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]