PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00004817001
Common NameGSBRNA2T00004817001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 159aa    MW: 17474.5 Da    PI: 6.2573
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00004817001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_138.42.7e-122568245
                         XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1  2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45
                         ++ ++ +rk++NRe+ArrsR RK++ ++ L+  ++ + +eN+  
  GSBRNA2T00004817001 25 SDERKRKRKESNRESARRSRMRKQKHLDDLTAQIAHFLEENSHI 68
                         5667899**********************************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.6E-1023107No hitNo description
SMARTSM003385.8E-182488IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.3352689IPR004827Basic-leucine zipper domain
PfamPF001705.4E-92868IPR004827Basic-leucine zipper domain
SuperFamilySSF579599.38E-122882No hitNo description
CDDcd147021.14E-202979No hitNo description
PROSITE patternPS0003603146IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MNKTEMGSPA SGNCSSGLQN YGSESDERKR KRKESNRESA RRSRMRKQKH LDDLTAQIAH  60
FLEENSHIVA GISVTTQQYV TIEGENSVLR AQFLELNQRL NSLNEIVEIA GGFWMETGQG  120
GGVIGFYDGV MNPLNLGFYN QTLMASASTV SADVFNCC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12732RKRKRK
22733RKRKRKE
32748RKRKRKESNRESARRSRMRKQK
44047RRSRMRKQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the micropylar endosperm and radicle tip in early germinating seeds. {ECO:0000269|PubMed:23461773}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00004817001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013669840.11e-105bZIP transcription factor 44-like
SwissprotC0Z2L53e-75BZP44_ARATH; bZIP transcription factor 44
TrEMBLA0A078IRL81e-114A0A078IRL8_BRANA; BnaCnng21800D protein
STRINGBo2g083760.11e-103(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50128154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.14e-56basic leucine-zipper 44
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  3. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]