PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00004859001
Common NameGSBRNA2T00004859001, LOC106353535
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 205aa    MW: 22532.8 Da    PI: 5.3331
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00004859001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.43.5e-184190255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                          ykGVr++  +g+WvAeIr+p   + r +r +lg+f t  eAa a++ a++kl+g
  GSBRNA2T00004859001 41 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFETSREAALAYDSAARKLYG 90
                         69****999.**********8...3.35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.24E-3040100No hitNo description
Gene3DG3DSA:3.30.730.103.0E-304199IPR001471AP2/ERF domain
PROSITE profilePS5103222.1154198IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-2141100IPR016177DNA-binding domain
PfamPF008471.4E-134190IPR001471AP2/ERF domain
SMARTSM003803.5E-3441104IPR001471AP2/ERF domain
PRINTSPR003679.3E-104253IPR001471AP2/ERF domain
PRINTSPR003679.3E-106480IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MSSIEPKVMM VGANKKQRTV NASSRKGCMR GKGGPENASC TYKGVRQRTW GKWVAEIREP  60
NRGARLWLGT FETSREAALA YDSAARKLYG PDAHLNLPES LRSYPETASP GTQVSQTPSS  120
NTGEKSSEES PSSSNEMSSW GTRSEISWEH MNVDLPVTDD SSIWQEATMS LGFPWVHEGD  180
DDISLFNSCI SDGYSNWDSF HSPL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-1842103668ATERF1
3gcc_A4e-1842103668ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.29140.0seed
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00004859001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0064341e-175AC006434.5 Genomic sequence for Arabidopsis thaliana BAC F10A5, complete sequence.
GenBankAC0237541e-175AC023754.3 Arabidopsis thaliana chromosome I BAC F1B16 genomic sequence, complete sequence.
GenBankAK1191321e-175AK119132.1 Arabidopsis thaliana mRNA for unknown protein, complete cds, clone: RAFL21-48-H08.
GenBankAK1759021e-175AK175902.1 Arabidopsis thaliana mRNA for transcription factor DREB2A like protein, complete cds, clone: RAFL22-54-M24.
GenBankCP0026841e-175CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013648752.11e-151dehydration-responsive element-binding protein 2D
SwissprotQ9LQZ21e-120DRE2D_ARATH; Dehydration-responsive element-binding protein 2D
TrEMBLA0A078JYM11e-149A0A078JYM1_BRANA; BnaCnng69090D protein
TrEMBLA0A3P6HAG21e-149A0A3P6HAG2_BRAOL; Uncharacterized protein
STRINGBo6g086320.11e-148(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53992648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.11e-117ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]