PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00004890001

Common Name

GSBRNA2T00004890001, LOC106434822

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

Trihelix

Protein Properties

Length: 298aa MW: 33414.8 Da PI: 10.2136

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00004890001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	74.4	1.9e-23	64	144	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt++e+l+Li+ ++e++ +++rg lk ++Wee+s + ++ g+ers++qC++k+e+l+kr+++++++++ s +p+++q+e GSBRNA2T00004890001 64 WTEDETLLLIDSYKEKWYAVGRGPLKSNQWEEISVSVsARSGVERSATQCRHKMEKLRKRFRAERQSMGPI-----SIWPFYSQME 144 *********************************998899************************84.....68*****8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	4.5E-20	64	146	No hit	No description
PROSITE profile	PS50090	6.69	64	121	IPR017877	Myb-like domain

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MATPSPTPSP PPPPPSDSNP NPPQQNPPPS NSTAIQTPRS PQTTVVALGA STSAFARKTQ 60 PVLWTEDETL LLIDSYKEKW YAVGRGPLKS NQWEEISVSV SARSGVERSA TQCRHKMEKL 120 RKRFRAERQS MGPISIWPFY SQMEELDSNP APISARPLTR LPPPSNHYAE DEDDDDDYED 180 ESLNKSRSIN HIVRRPGTVN RFAGVGGGLL QWGQKERSKR KKKDEGGGGE RRMKGARAVA 240 YEIRAFAEKT MVMENKKMEF AKETVKLRKE MEMKRLKLIQ SSQAQLLQFL NTSFASF*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.14382	0.0	leaf\| seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00004890001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013731132.1	0.0	trihelix transcription factor ASIL1
TrEMBL	A0A078IQB4	0.0	A0A078IQB4_BRANA; BnaCnng21880D protein
STRING	Bo7g031620.1	1e-180	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10281	22	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24860.1	1e-122	Trihelix family protein

Link Out ? help Back to Top
Entrez Gene	106434822

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]