PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00004938001
Common NameGSBRNA2T00004938001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 520aa    MW: 57304.1 Da    PI: 5.2602
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00004938001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.41.2e-08222242526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                          +C+ f++ G C++Gd+C +aHg
  GSBRNA2T00004938001 222 PCPEFRK-GSCSRGDSCEYAHG 242
                          8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484037.77E-159135IPR020683Ankyrin repeat-containing domain
CDDcd002041.04E-1411135No hitNo description
PfamPF127962.9E-1052126IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029714.79657133IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00445787IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.203.2E-1557136IPR020683Ankyrin repeat-containing domain
SMARTSM002480.001992124IPR002110Ankyrin repeat
PROSITE profilePS500889.77892127IPR002110Ankyrin repeat
SMARTSM003562.5E-5217243IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.6E-5221244IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-6222242IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.619222244IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-4250280IPR000571Zinc finger, CCCH-type
SMARTSM0035620252275IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.136252276IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MGDDELSHLK FTLLLESAAC NDLSGFKSLI EEEGLSTIDR SGLWYGRRLG SKKMGFEERT  60
PLMIAALFGS KEIVDYIIST GLVDVNRSCG SDGATALHCA VSGLSGNSLE VVTLLLNASA  120
DPESRDADGS KPVDVMTFPC LSPVEVEVEV LLSPPRKEYP IDPTLPDIKN GIYGTDEFRM  180
YAFKIKPCSR AYSHDWTECP FVHPGENARR RDPRKYHYSC VPCPEFRKGS CSRGDSCEYA  240
HGIFECWLHP AQYRTRLCKD ETNCSRRVCF FAHKPDELRP LYTSTGSGVP SPRSSFSPNG  300
IPSPFGSGKP WMNWPSATPP TLHLPGSRLK SALNAREFNF SEEIHQSLAS PGRWNNNNTA  360
ASPPFSGNGM NRLSSGGISP VHSLSDMFGA SSLSSSPVGA NYQFSMDSLA SRAAAFANQR  420
SQSFIERNNQ QLPVTTTCLD DWGSLDGKLD WSVNGDELQE LRNSTSFRLR AGSMESRTPT  480
ELEEPDVSWV EPLVKEPQET RVAPVWMEQS YMETEQTVA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00004938001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013716789.10.0zinc finger CCCH domain-containing protein 66-like
RefseqXP_022549039.10.0zinc finger CCCH domain-containing protein 66-like
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A078IQD70.0A0A078IQD7_BRANA; BnaA10g29460D protein
STRINGBra002632.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87726107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.10.0C3H family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]