PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00004962001

Common Name

GSBRNA2T00004962001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

C2H2

Protein Properties

Length: 165aa MW: 18739.1 Da PI: 6.3

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00004962001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.9	3.8e-05	32	54	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC++C+k++s L H+++H GSBRNA2T00004962001 32 YKCKYCPKTYSKGQALGGHQNVH 54 9*******************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.45E-7	29	60	No hit	No description
Pfam	PF13912	1.3E-6	31	51	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	2.0E-4	32	58	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.822	32	59	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	34	54	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 165 aa Download sequence Send to blast
MDPVDMLSSE SSYGNDVSDD GIATELMEQA TYKCKYCPKT YSKGQALGGH QNVHKREREI 60 TKRQERAMLV NMNPPDPYPY PHPFPSQYAL PSGFEQRRYI IDEPDILHVV YNSSQSPYQL 120 IRHGSTPHSI IIASIVTHLL KSLSREMDAE KEDHDLSLYL SLKL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00004962001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC241048	0.0	AC241048.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB058I10, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009130863.1	2e-81	PREDICTED: zinc finger protein GIS-like
TrEMBL	A0A078IQF4	1e-118	A0A078IQF4_BRANA; BnaA03g55160D protein
STRING	Bra005840.1-P	9e-81	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15741	13	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05120.1	9e-30	C2H2 family protein

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]