PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00005560001
Common NameGSBRNA2T00005560001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 247aa    MW: 28589.7 Da    PI: 9.7758
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00005560001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF61.97.3e-202368651
                         HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         +s +  +++kR+ +++KKAeELS+LC++ev+vi ++s+g l+++++
  GSBRNA2T00005560001 23 SSLKAASLAKRQVTVFKKAEELSILCGVEVSVICYGSDGALRTWPK 68
                         677889**************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.1E-4469IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.27E-1625101IPR002100Transcription factor, MADS-box
PROSITE profilePS5006611.7182670IPR002100Transcription factor, MADS-box
CDDcd002667.87E-152691No hitNo description
PfamPF003194.0E-122866IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-53247IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-54768IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MSSSLSKTTK VSQFRPTLFQ KASSLKAASL AKRQVTVFKK AEELSILCGV EVSVICYGSD  60
GALRTWPKDR EKVKDMAVRY SQLSEVKRRI KQWDLNKFLE EVNKDPKKKN KKKKVKLESS  120
YKYPDWDPRF DNCSVEQLTE LIQSLECKQT IMQDRLRAVL ESQRQRNMYY MNMAEPTQMN  180
HLQQQLPNQD QSLAPLPNSL TVYQYPNMDT YSSFLGGQET GRNEFLSTNM IPYNSFNSNC  240
VNMFQN*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00005560001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022547598.10.0agamous-like MADS-box protein AGL103
SwissprotQ9LSB21e-62AG103_ARATH; Agamous-like MADS-box protein AGL103
TrEMBLA0A078FZD40.0A0A078FZD4_BRANA; BnaA01g26610D protein
STRINGBra037571.1-P1e-162(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56620126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18650.16e-57AGAMOUS-like 103
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]