PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00005724001
Common NameGSBRNA2T00005724001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 111aa    MW: 12068.7 Da    PI: 4.7631
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00005724001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS21.82e-07964321372
                 GRAS 321 eaGFkpvplsekaakqaklllrkvk.sdgyrve...eesgslvlgWkdrpLvsvSa 372
                          +  F+ v ++e+aa++ak++l++++ ++g + +   ++ +slvl+Wk++++v++S+
  GSBRNA2T00005724001   9 NLTFSGVGFGETAASEAKMMLEEHAtGWGLKRDvddDDVESLVLTWKGHSVVFASS 64 
                          56799********************7787665544455799************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035146.6E-5964IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    Send to blast
MYLSKYSKNL TFSGVGFGET AASEAKMMLE EHATGWGLKR DVDDDDVESL VLTWKGHSVV  60
FASSCCAKSS NMIGQLAISS CLKFASLFFF FFFSSTSNGI SSDELEKLTF *
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00005724001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895267e-88AC189526.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB092J12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A078FZP87e-73A0A078FZP8_BRANA; BnaA09g07360D protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.12e-14GRAS family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]