PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00005729001
Common NameGSBRNA2T00005729001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 208aa    MW: 22836.3 Da    PI: 9.0459
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00005729001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.5e-0588110123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ykC+ CgksFs+   L  H  +H
  GSBRNA2T00005729001  88 YKCTVCGKSFSSYQALGGHKTSH 110
                          9***********99998888777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.24E-1087110No hitNo description
Gene3DG3DSA:3.30.160.605.1E-588110IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.002888110IPR015880Zinc finger, C2H2-like
PfamPF139121.7E-1388112IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.09488110IPR007087Zinc finger, C2H2
PROSITE patternPS00028090110IPR007087Zinc finger, C2H2
SuperFamilySSF576678.24E-10147174No hitNo description
PfamPF139121.3E-10151176IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.242152179IPR007087Zinc finger, C2H2
SMARTSM003550.82152174IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280154174IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MALETLNSPT SATATARPFL RYRKEMEPEN LEQWAKRKRT KRQRFDHNQE KTPSEEEYLA  60
LCLLMLARGS TVQSLPPPSL PSSDHRGYKC TVCGKSFSSY QALGGHKTSH RKPVNNTDVP  120
SNQEPFNNTH RNSNGGSVVI NGNGVSQSGK THTCSICFKS FSSGQALGGH KRCHYDDDER  180
SSEQSGIGGH RGFDLNLPAD QVTVVIS*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in roots and at lower levels in leaves and stems. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor involved in the inhibition of plant growth under abiotic stress conditions. Can repress the expression of various genes, including osmotic stress and abscisic acid-repressive genes and auxin-inducible genes, by binding to their promoter regions in a DNA sequence-specific manner. {ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00005729001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), ethylene, dehydration, salt and cold. {ECO:0000269|PubMed:10806347, ECO:0000269|PubMed:15333755, ECO:0000269|PubMed:21852415}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895260.0AC189526.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB092J12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009112214.11e-140PREDICTED: zinc finger protein AZF1-like
SwissprotQ9SSW12e-99AZF1_ARATH; Zinc finger protein AZF1
TrEMBLA0A078G0641e-154A0A078G064_BRANA; BnaA09g07340D protein
STRINGBra037845.1-P1e-140(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31212264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67450.18e-92zinc-finger protein 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]