PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00005805001
Common NameGSBRNA2T00005805001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CAMTA
Protein Properties Length: 1020aa    MW: 114072 Da    PI: 6.2556
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00005805001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-11894.7e-59481652118
                 CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahsee 90 
                          l+e ++rwl++ ei++iL n++k+++++e+++rp+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+++vl+cyYah+e+
  GSBRNA2T00005805001  48 LSEaQHRWLRPAEICEILRNYQKFHIASEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSIDVLHCYYAHGED 137
                          45559************************************************************************************* PP

                 CG-1  91 nptfqrrcywlLeeelekivlvhylevk 118
                          n++fqrrcyw+Le+el +iv+vhylevk
  GSBRNA2T00005805001 138 NENFQRRCYWMLEQELMHIVFVHYLEVK 165
                          *************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143786.82644170IPR005559CG-1 DNA-binding domain
SMARTSM010768.0E-8747165IPR005559CG-1 DNA-binding domain
PfamPF038595.7E-5250164IPR005559CG-1 DNA-binding domain
SuperFamilySSF812961.64E-12430514IPR014756Immunoglobulin E-set
SuperFamilySSF484032.18E-19608722IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.8E-19611723IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029720.553611693IPR020683Ankyrin repeat-containing domain
PfamPF127964.3E-8612687IPR020683Ankyrin repeat-containing domain
CDDcd002046.18E-16617720No hitNo description
PROSITE profilePS500889.351628660IPR002110Ankyrin repeat
SMARTSM002481500628657IPR002110Ankyrin repeat
PROSITE profilePS5008811.301661693IPR002110Ankyrin repeat
SMARTSM002484.7E-4661690IPR002110Ankyrin repeat
SMARTSM000150.32830852IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525409.03E-8831880IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF006120.002832851IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.858832860IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0092853875IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.304854878IPR000048IQ motif, EF-hand binding site
PfamPF006124.5E-4856875IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1020 aa     Download sequence    Send to blast
MVVVCHVCRK LIITCERECY QLFTSGTVSR FKAFAVVVFA GTDIQQLLSE AQHRWLRPAE  60
ICEILRNYQK FHIASEPPNR PPSGSLFLFD RKVLRYFRKD GHNWRKKKDG KTVKEAHEKL  120
KVGSIDVLHC YYAHGEDNEN FQRRCYWMLE QELMHIVFVH YLEVKGNRIS SSGIKENNSN  180
SLSGSTSVNI DSTANTSSTL SPLCEDADSG NRDGWIHGNR VKESDSQRLV GVPALDASFE  240
NPLARYQNPP YNPLLTQTNP TNTGLMSVEG HLRNPLQNQV NWQIPVQDSL PLQKWPMDSH  300
GTDLALHENF GTFSSLIGSQ NQQQPIGGGS FQAPFTSVEA AYIPKFGPED LLYEASANQT  360
LPLRKSLLKK EDSLKKVDSF SRWVSNELAE MEDLQMQSSS GGIGWTSVET AAAASSLSPS  420
LSKDQRFTMI DFWPKWTQTD TEVEVMVIGT FLLSPQEVTS YSWACMFGEV EVPAEILVDG  480
VLCCRAPPHE VGQVPFYITC SDRFSCSEVR EFDFLPGSAR KLNTADIYGA YTNEASLHLR  540
FENLLARMSS AQEHNVFEDV GEKRRKISRI MLLKDEKESF LTSTAEKDLT EVEAKERLVR  600
EEFEDKLYLW LIQKVTEEGK GPNVLDEEGQ GVLHLAAALG YDWAIKPILA AGVSINFRDA  660
NGWSALHWAA YSGREDTVAL LVSLGADSGA LTDPSPELPL GKTASDLAYG NGHRGISGFL  720
AESSLTSYLE KLTVDGKEDA STDSSRAKAV QTVAERTATP MSYGDDSLTA VLNATQAADR  780
LHQVFRMQSF QRKQLSEIGE KNEFGLSDEL AVSFAAGKSK KAGGHSSGAA VHAAAVQIQK  840
KYRGWKKRKE FLLIRQRIVK IQAHVRGHQV RKQYRAIIWS VGLLEKIILR WRRKGSGLRG  900
FKRDTVTKAP EPVCAAPTQE DDYDFLKEGR KQTEERLQKA LTRVKSMAQY PEARAQYRRL  960
LTVVEGIREN EASSSSAMNN NNNNNNSNTE EAANYNEEDD LIDIDSLLDD DTFMSLAFE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.211390.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, old leaves, petals, sepals, top of carpels, stigmas, stamen filaments, anthers and siliques, but not in pollen. {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00005805001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:25627216}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013661269.10.0calmodulin-binding transcription activator 2-like
SwissprotQ6NPP40.0CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBLA0A078FZU40.0A0A078FZU4_BRANA; BnaA09g06760D protein
STRINGBra037769.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40822452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]