PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00005865001

Common Name

GSBRNA2T00005865001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

GeBP

Protein Properties

Length: 358aa MW: 40322.9 Da PI: 7.6953

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00005865001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	123.7	8.8e-39	118	210	2	98
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifel 91 lfqrlwseeDei lLqG+idf+++tgksp++d+d+fyef+kksisf++sk q veKir+L+kK+ kkv++ g s+ k+hd ++f+l GSBRNA2T00005865001 118 LFQRLWSEEDEIYLLQGMIDFNSETGKSPYEDMDGFYEFIKKSISFEASKYQTVEKIRSLRKKYVKKVRR---GV-ESLPKAHDMECFKL 203 79******************************************************************...55.49******** PP DUF573 92 skkiWgs 98 sk iWgs GSBRNA2T00005865001 204 SKYIWGS 210 ***95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	6.8E-31	119	209	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MAKKKLNPLE DPPKSSSSDD EVETLSGEEE EEEEEAEEHI SDDSSSEEED DLMDPVIIPP 60 ARKPKSPARH AVASGSKKLT AVTVASPSKP GSKRSSEEIS PKKVHAKRSK KEDSKKPLFQ 120 RLWSEEDEIY LLQGMIDFNS ETGKSPYEDM DGFYEFIKKS ISFEASKYQT VEKIRSLRKK 180 YVKKVRRGVE SLPKAHDMEC FKLSKYIWGS NGMALKSNLK KKIDSVKPHG KEVEKDVESY 240 GSLKKKLDFL EANEGRRRLR GLGKKVEVDK EVLVNGDSKS VGVMSASDWF EDSFLVGSIA 300 SLGVGERFVK QKWSMVAVET KKKMEEKWKL LQAKEMELVL QKTDFMREVG SVIAEAS*

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MAKKKLNPLE DPPKSSSSDD EVETLSGEEE EEEEEAEEHI SDDSSSEEED DLMDPVIIPP  60
ARKPKSPARH AVASGSKKLT AVTVASPSKP GSKRSSEEIS PKKVHAKRSK KEDSKKPLFQ  120
RLWSEEDEIY LLQGMIDFNS ETGKSPYEDM DGFYEFIKKS ISFEASKYQT VEKIRSLRKK  180
YVKKVRRGVE SLPKAHDMEC FKLSKYIWGS NGMALKSNLK KKIDSVKPHG KEVEKDVESY  240
GSLKKKLDFL EANEGRRRLR GLGKKVEVDK EVLVNGDSKS VGVMSASDWF EDSFLVGSIA  300
SLGVGERFVK QKWSMVAVET KKKMEEKWKL LQAKEMELVL QKTDFMREVG SVIAEAS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	243	257	KKKLDFLEANEGRRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00005865001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018447683.1	1e-148	PREDICTED: probable transcription factor At1g61730
TrEMBL	A0A078G169	0.0	A0A078G169_BRANA; BnaC08g08690D protein
STRING	Bo8g035460.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM313	28	181

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61730.1	5e-66	DNA-binding storekeeper protein-related transcriptional regulator

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]