PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00005999001
Common NameGSBRNA2T00005999001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family M-type_MADS
Protein Properties Length: 345aa    MW: 39049 Da    PI: 6.1848
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00005999001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF374.2e-121152344
                         --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
               SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                         i+n s r+ t+  R++g+lKK  E+ +LCd++++ +i+s+ +
  GSBRNA2T00005999001 11 ISNVSARKRTLNLRKKGLLKKLDEIKTLCDVDACAVIYSPYN 52
                         99*************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006613.862149IPR002100Transcription factor, MADS-box
SMARTSM004322.0E-16160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.24E-19295IPR002100Transcription factor, MADS-box
PfamPF003191.5E-111152IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MTRKKTNLAY ISNVSARKRT LNLRKKGLLK KLDEIKTLCD VDACAVIYSP YNSTPEVWPS  60
NSEVQKVMEK FENLPEEKQT KKSFNHEEFL NQTITKVQNQ VKKLIEGNND KLMEELMFSC  120
LNGNMGDLAI DDSNRGNLCE FIDGHLKKLY HHKNVILKNT HLETGESSSM AMAMGMPPVA  180
MAEAGSSFFN SPQQTNESQP LVTSNQGQEH ISSHGNQFLN VPTNFPQQPN EVQCAVSSNQ  240
GLEHVPSLKN NFMCAPIFNS PLLTNESQPL PIIFSNQGAN HVDSLASNLL PVSNHGVNTQ  300
VMNQDEVYYP LNQQDWYVKE MMEQSEPTCF PWMEENHHYN HRQF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00005999001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013624445.10.0PREDICTED: MADS-box transcription factor PHERES 2-like isoform X1
RefseqXP_013725461.10.0MADS-box transcription factor PHERES 2-like
TrEMBLA0A078FWM10.0A0A078FWM1_BRANA; BnaAnng02950D protein
STRINGBo1g150260.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28700.18e-80AGAMOUS-like 46
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]