PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00006039001
Common NameGSBRNA2T00006039001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C3H
Protein Properties Length: 433aa    MW: 46088.7 Da    PI: 8.1275
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00006039001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.83.2e-124771327
                         S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                         ++ C +++rtG C yG+rC+F+H++
  GSBRNA2T00006039001 47 EPDCIYYLRTGVCGYGSRCRFNHPR 71
                         799********************96 PP
2zf-CCCH36.48.6e-1290114327
                          S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                          ++ C++f+rtGtC++G++Ck++H++
  GSBRNA2T00006039001  90 HPVCQHFMRTGTCQFGASCKYHHPR 114
                          789********************96 PP
3zf-CCCH39.11.3e-12135159226
                          -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          ++++C++++rtG+Ck+G +C+F+H+
  GSBRNA2T00006039001 135 GEKECSYYMRTGQCKFGLTCRFNHP 159
                          6789********************9 PP
4zf-CCCH39.87.7e-13286311227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++C++f+rtG Ck+G++C+++H+p
  GSBRNA2T00006039001 286 DQPECQYFMRTGDCKFGSSCRYHHPP 311
                          689*********************97 PP
5zf-CCCH33.28.7e-11334359227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          + + C +fa+ G+Ck+G+ CkF+H++
  GSBRNA2T00006039001 334 GVAQCTHFAQHGICKFGPACKFNHSM 359
                          6788********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.7E-44471IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.7424472IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-94771IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-64972IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-55071IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-587114IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.23487115IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-689114IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-989114IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-592114IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-5133160IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.089133161IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-10135159IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5135160IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-4139158IPR000571Zinc finger, CCCH-type
SMARTSM003566.8E-6284311IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.042284312IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-10286311IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.9E-6287311IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4290309IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.742332360IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-4332359IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-8334358IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-6335360IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-4338359IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MDRYGRAGEE GSRSDPSIQW TSHGVETSMG RLALGGGGES YPERSDEPDC IYYLRTGVCG  60
YGSRCRFNHP RNRGAVIGGG DGGLPERMGH PVCQHFMRTG TCQFGASCKY HHPRQGGGSV  120
APVSLSYLGY PLRQGEKECS YYMRTGQCKF GLTCRFNHPV PLQPQQQQPQ PQLQTIYPTL  180
QSQPMPSSQQ YGLVLSRPSL LPASYLPSPY GGPPPMVMPP GMVTYPSWNP YQASLTAMPS  240
PGTQPSSSVY GIAPLSPSGP AYTGTYQSGG PSLTTSTEQS FPQRPDQPEC QYFMRTGDCK  300
FGSSCRYHHP PLDAVLQPKT GVLLNSIGLP LRPGVAQCTH FAQHGICKFG PACKFNHSMS  360
SSLSYSPSAS SLTNMPVAPY PIGSSAPISS SNEPTTEAVT AVVSSPMVSG LSQQEAAGTS  420
CDSAIEAKAS SS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00006039001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013687965.10.0zinc finger CCCH domain-containing protein 34-like isoform X1
RefseqXP_022557880.10.0zinc finger CCCH domain-containing protein 34-like isoform X1
SwissprotQ9SQU40.0C3H34_ARATH; Zinc finger CCCH domain-containing protein 34
TrEMBLA0A078G2G70.0A0A078G2G7_BRANA; BnaAnng03230D protein
STRINGBra040220.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17792786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06410.10.0C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]