PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00006345001

Common Name

GSBRNA2T00006345001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 682aa MW: 74680.1 Da PI: 6.3039

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00006345001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.1	0.00036	518	566	13	40
HHHHHHHHHHHHCTSCCC........................TTS-STC CS HLH 13 RdriNsafeeLrellPkas.....................kapskKlsK 40 R+ i +++ eLrel+P+ s ++ KlsK GSBRNA2T00006345001 518 RQLIQDRIKELRELVPNGSkcsidsllertikhmlflqnvTKHADKLSK 566 67799************53355555555555555555555555555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	1.9E-30	6	164	IPR025610	Transcription factor MYC/MYB N-terminal
CDD	cd00083	3.99E-4	499	556	No hit	No description
PROSITE profile	PS50888	11.28	505	554	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.75E-5	518	560	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.7E-4	518	567	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 682 aa Download sequence Send to blast
MGSTSQEILR SLCSNTVWRY AVFWKLNHRS RMVLTLEDAY YDNDNHGHNN SPEVQGCSVI 60 PKDMHGAHDS LGLVLAKMAY HVYSLGEGIV GHVALSGGHQ WVFPENYGNC HSAAEFHNVW 120 ESQISAGVKT ILVVAVGPCG VVQLGSLRKV DEDVTLVNHI RHMFSALKDP MADHAASFMQ 180 CNMNNSLSLP KIPSECLHVE AFPNCSGEVG KAMNVASVPY NTPSCLLMEK AAQAVQGSSC 240 GSYSSVTFGF PIDLIDAKHE NQVGDPNLHQ YVKNHVLNNS SSSALATEAE RLISGQSHPG 300 LDSAFYDSSR TGKESSYQNE VFQLSENQGD RYIEETERML EGKCEDALIS SGYPFAGSEL 360 LEALGSGFKQ TSRGGHEELV KSEHGSTTRP TDDMSHSQLT FDPGPGPGPE NLLDAVVANV 420 CHSDGNARDD ILSSRSVQSL LTSMAEPSGQ KMHNQLPLTE VYTQQNPSDI CGAFSSIGFS 480 STCPSSSSDQ FQTSLEMPKK HKKRAKPGES SRPRPRDRQL IQDRIKELRE LVPNGSKCSI 540 DSLLERTIKH MLFLQNVTKH ADKLSKSATT KMQQKETGTQ GSTCAVEVGG HLQVCSIIVE 600 NLNKQGMVLI EMLCEECGHF LEIANVIRSL DLIILRGVTE AQGEKTWICF VVESQNNKVM 660 QRMDILWSLV QIFQPKANGK H*

Sequence ? help Back to Top

Protein Sequence Length: 682 aa Download sequence Send to blast

MGSTSQEILR SLCSNTVWRY AVFWKLNHRS RMVLTLEDAY YDNDNHGHNN SPEVQGCSVI  60
PKDMHGAHDS LGLVLAKMAY HVYSLGEGIV GHVALSGGHQ WVFPENYGNC HSAAEFHNVW  120
ESQISAGVKT ILVVAVGPCG VVQLGSLRKV DEDVTLVNHI RHMFSALKDP MADHAASFMQ  180
CNMNNSLSLP KIPSECLHVE AFPNCSGEVG KAMNVASVPY NTPSCLLMEK AAQAVQGSSC  240
GSYSSVTFGF PIDLIDAKHE NQVGDPNLHQ YVKNHVLNNS SSSALATEAE RLISGQSHPG  300
LDSAFYDSSR TGKESSYQNE VFQLSENQGD RYIEETERML EGKCEDALIS SGYPFAGSEL  360
LEALGSGFKQ TSRGGHEELV KSEHGSTTRP TDDMSHSQLT FDPGPGPGPE NLLDAVVANV  420
CHSDGNARDD ILSSRSVQSL LTSMAEPSGQ KMHNQLPLTE VYTQQNPSDI CGAFSSIGFS  480
STCPSSSSDQ FQTSLEMPKK HKKRAKPGES SRPRPRDRQL IQDRIKELRE LVPNGSKCSI  540
DSLLERTIKH MLFLQNVTKH ADKLSKSATT KMQQKETGTQ GSTCAVEVGG HLQVCSIIVE  600
NLNKQGMVLI EMLCEECGHF LEIANVIRSL DLIILRGVTE AQGEKTWICF VVESQNNKVM  660
QRMDILWSLV QIFQPKANGK H*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may regulate root development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00006345001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK352985	0.0	AK352985.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-15-P09.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013744315.1	0.0	transcription factor bHLH155-like
Swissprot	Q58G01	0.0	LHWL3_ARATH; Transcription factor bHLH155
TrEMBL	A0A078G1B8	0.0	A0A078G1B8_BRANA; BnaA04g18110D protein
STRING	Bo4g176150.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2083	20	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31280.1	0.0	conserved peptide upstream open reading frame 7

Publications ? help Back to Top
Ohashi-Ito K,Matsukawa M,Fukuda H An atypical bHLH transcription factor regulates early xylem development downstream of auxin. Plant Cell Physiol., 2013. 54(3): p. 398-405 [PMID:23359424] Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]