PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00006370001
Common NameGSBRNA2T00006370001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bZIP
Protein Properties Length: 319aa    MW: 35295.2 Da    PI: 5.8265
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00006370001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.35.3e-11187245563
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                          kr++r   NR +A rs +RK  +i eLe+kv++L++e ++L  +l  l+  +  l+ e+
  GSBRNA2T00006370001 187 KRAKRIWANRQSAARSKERKTRYIFELERKVQTLQTEATTLSAQLTLLQRDANGLTVEN 245
                          9***********************************************99998888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.6E-15183247IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.53185248IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.83E-10187237No hitNo description
Gene3DG3DSA:1.20.5.1701.2E-11187241No hitNo description
PfamPF001706.3E-9187238IPR004827Basic-leucine zipper domain
CDDcd147034.17E-22188237No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MDKEKSPAPP CGGGGRLPPP SPSGRSSPFS DANRLSHDMS RMLEHPPKKI GHRRAHSEIL  60
TLPDDLSFDF DLGVVGGSAD VPSFSDDTEG GDLMSMYLDM DKFNSSTATS SAQVGEPSRT  120
AWKNESVMPQ NSFGERPRVR HQHSHSMDGS LNISEMLVSG NEDDSVVDAK KSMSAAKLAE  180
LALVDPKRAK RIWANRQSAA RSKERKTRYI FELERKVQTL QTEATTLSAQ LTLLQRDANG  240
LTVENNELKL RLQTMEQRVQ LQDELNEALK EEIHHLKALT GQVASNGASS AMNYDEKTEA  300
RPDGELRNNE YYVHFTDE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.116495e-64seed
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed constitutively at a low level in young seedlings and in roots, stems and leaves of mature plants.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor with an activatory role.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00006370001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3532831e-155AK353283.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-24-D07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013744309.10.0probable transcription factor PosF21
SwissprotQ040881e-172POF21_ARATH; Probable transcription factor PosF21
TrEMBLA0A078G0W00.0A0A078G0W0_BRANA; BnaA04g18340D protein
STRINGBra021735.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24452772
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31370.51e-143bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  3. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]